Graph.java

package GPL;

import java.lang.Integer;
import java.util.LinkedList;
import java.util.Collections;
import java.util.Comparator;
import java.util.Set;
import java.util.HashSet;

// *************************************************************************

public class Graph {

    // Executes MSTPrim
    public void run( Vertex s )
     {
          	System.out.println("MSTPrim");
        Graph gaux = Prim( s );
//        Graph.stopProfile();
        gaux.display();
//        Graph.resumeProfile();
        original( s );
    }

    public  Graph Prim( Vertex r ) {
        Vertex root;

        root = r;
        Vertex x;

        // 2. and 3. Initializes the vertices
        for ( VertexIter vxiter = getVertices(); vxiter.hasNext(); )
        {
            x = vxiter.next();
            x.pred = null;
            x.key = Integer.MAX_VALUE;
        }

        // 4. and 5.
        root.key = 0;
        root.pred = null;

        // 2. S <- empty set

        // 1. Queue <- V[G], copy the vertex in the graph in the priority queue
        LinkedList Queue = new LinkedList();
	  //dja: added for performance reasons
        Set indx = new HashSet( );

        // Inserts the root at the head of the queue
        //dja: Moved from below the for loop for performance reasons
        Queue.add( root );
     
        //dja: added for performance reasons
        indx.add( root.getName( ) );
        for ( VertexIter vxiter = getVertices(); vxiter.hasNext(); )
        {
            x = vxiter.next();
            if ( x.key != 0 ) // this means, if this is not the root
            {
                Queue.add( x );
	          //dja: added for performance reasons
                indx.add( x.getName( ) );
            }
        }

        // Inserts the root at the head of the queue
        //dja: moved above for loop for perf. reasons
        // Queue.addFirst( root );

        // 6. while Q!=0
        Vertex ucurrent;
        int j,k,l;
        int pos;
        LinkedList Uneighbors;
        Vertex u,v;
        EdgeIfc en;
        NeighborIfc vn;

        int wuv;
        boolean isNeighborInQueue = false;

        // Queue is a list ordered by key values.
        // At the beginning all key values are INFINITUM except
        // for the root whose value is 0.
        while ( Queue.size()!=0 )
        {
            // 7. u <- Extract-Min(Q);
            // Since this is an ordered queue the first element is the min
            u = ( Vertex )Queue.removeFirst();

		//dja: added code below for per. reasons
            indx.remove( u.getName( ) );
            

            // 8. for each vertex v adjacent to u
            Uneighbors = u.getNeighborsObj( );

            // dja - fix compile erros
            // for( EdgeIter edgeiter = u.getEdges(); edgeiter.hasNext(); )
            k = 0;
            for( EdgeIter edgeiter = u.getEdges(); edgeiter.hasNext(); k++ )
            {
                vn = ( NeighborIfc )Uneighbors.get( k );
                // dja - fix compile bug
                // en = edgeiter.next();
//                en = ( Edge ) edgeiter.next();
                en = edgeiter.next();

                v = en.getOtherVertex(u);

                // Check to see if the neighbor is in the queue
                isNeighborInQueue = false;

                // if the Neighor is in the queue
		    //dja: removed 2 lines for performance reasons and added 3rd line.  left 4th line alone
                //int indexNeighbor = Queue.indexOf( v );
                //if ( indexNeighbor>=0 )
                if ( indx.contains( v.getName( ) ) )
                    isNeighborInQueue = true;
                wuv = en.getWeight();

                // 9. Relax (u,v w)
                if ( isNeighborInQueue && ( wuv < v.key ) )
                    {
                    v.key = wuv;
                    v.pred = u.getName();
                    Uneighbors.set( k,vn ); // adjust values in the neighbors

                    // update the values of v in the queue
                    // Remove v from the Queue so that we can reinsert it
                    // in a new place according to its new value to keep
                    // the Linked List ordered
		        //dja: added for perf. reasons
			  Object residue = ( Object ) v;
                    Queue.remove( residue );
	              // Object residue = Queue.remove( indexNeighbor );

			  //dja: added for performance reasons
                    indx.remove( v.getName( ) );

                    // Get the new position for v
                    int position = Collections.binarySearch( Queue,v,
                                              new Comparator() {
                        public int compare( Object o1, Object o2 )
                                                 {
                            Vertex v1 = ( Vertex )o1;
                            Vertex v2 = ( Vertex )o2;

                            if ( v1.key < v2.key )
                                return -1;
                            if ( v1.key == v2.key )
                                return 0;
                            return 1;
                        }
                    } );

                    // Adds v in its new position in Queue
                    if ( position < 0 )  // means it is not there
                                         {
                        Queue.add( - ( position+1 ),v );
                    }
                    else      // means it is there
                                         {
                        Queue.add( position,v );
                    }
                
 			  //dja: added for perf. reasons
                    indx.add( v.getName( ) );

                } // if 8-9.
            } // for all neighbors
        } // of while

        // Creates the new Graph that contains the SSSP
        String theName;
        Graph newGraph = new  Graph();

        // Creates and adds the vertices with the same name
        // dja - fixed compile bug
        // for ( i=0; i<numvertices; i++ )
        for ( VertexIter vxiter = getVertices( ); vxiter.hasNext( ); )
        {
            // dja - fixing compile bugs
            // theName = ( ( Vertex )vertices.get( i ) ).name;
            Vertex vtx = vxiter.next( );
            theName = vtx.name;

            newGraph.addVertex( new  Vertex().assignName( theName ) );
        }

        // Creates the edges from the NewGraph
        Vertex theVertex, thePred;
        Vertex theNewVertex, theNewPred;
        EdgeIfc   e;

        // Creates and adds the vertices with the same name
        // dja - fixed compile bug
        // for ( i=0; i<numvertices; i++ )
        for ( VertexIter vxiter = getVertices( ); vxiter.hasNext( ); )
        {
            // theVertex and its Predecessor
            // dja - fixing compile bugs
            // theVertex = ( Vertex )vertices.get( i );
            theVertex = vxiter.next( );

            thePred = findsVertex( theVertex.pred );

            // if theVertex is the source then continue we dont need
            // to create a new edge at all
            if ( thePred==null )
                continue;

            // Find the references in the new Graph
            theNewVertex = newGraph.findsVertex( theVertex.name );
            theNewPred = newGraph.findsVertex( thePred.name );

            // Creates the new edge from predecessor -> vertex in the newGraph
            // and ajusts the adorns based on the old edge
//            EdgeIfc theNewEdge = new  Edge();

            // dja - fix compile errors
            // theNewEdge.EdgeConstructor( theNewPred, theNewVertex );
            EdgeIfc theNewEdge = newGraph.addEdge( theNewPred, theNewVertex );

            // dja - fix compile errors
            // e = findsEdge( thePred,theVertex );
            e = findsEdge( thePred,theVertex );

            // dja - fix comple errors
            // theNewEdge.adjustAdorns( e );
            theNewEdge.adjustAdorns( e );


            // Adds the new edge to the newGraph
            // dja - fix compile errors
            // newGraph.addEdge( theNewEdge );
        }
        return newGraph;

    } // MST

}