/*
 * The MIT License (MIT)
 *
 * Copyright (c) 2007-2015 Broad Institute
 *
 * Permission is hereby granted, free of charge, to any person obtaining a copy
 * of this software and associated documentation files (the "Software"), to deal
 * in the Software without restriction, including without limitation the rights
 * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
 * copies of the Software, and to permit persons to whom the Software is
 * furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
 * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
 * THE SOFTWARE.
 */

package org.broad.igv.util;

import static org.junit.Assert.assertEquals;
import org.junit.Test;
import org.broad.igv.util.SOLIDUtils;

/**
 * User: jrobinso
 * Date: Feb 21, 2010
 */
public class SOLIDUtilsTest {
    @Test
    public void testConvertToColorSpace() {
        // Example from Solid data mgt app node


        byte[] sequence = "GTGCACCGTGCACG".getBytes();
        byte[] expCS = new byte[]{'G', 1, 1, 3, 1, 1, 0, 3, 1, 1, 3, 1, 1, 3};

        byte[] cs = SOLIDUtils.convertToColorSpace(sequence);
        for (int i = 0; i < sequence.length; i++) {
            assertEquals(String.valueOf(i), expCS[i], cs[i]);
        }
        // Add your code here
    }
}