/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package org.broad.igv.feature;
import org.broad.igv.feature.*;
/**
* @author jrobinso
* Date: 11/29/12
* Time: 6:59 PM
*/
public class PSLRecord extends BasicFeature {
private int tSize;
private int match;
private int misMatch;
private int repMatch;
private int qNumInsert;
private int tNumInsert;
private int qGapCount;
private int tGapCount;
private int qSize;
private int ns;
private int qGapBases;
private int tGapBases;
private String text;
public void setMatch(int match) {
this.match = match;
}
public void setMisMatch(int misMatch) {
this.misMatch = misMatch;
}
public void setRepMatch(int repMatch) {
this.repMatch = repMatch;
}
public void setQGapCount(int QNumInsert) {
this.qGapCount = QNumInsert;
}
public void setTGapCount(int TNumInsert) {
this.tGapCount = TNumInsert;
}
public void setQSize(int qSize) {
this.qSize = qSize;
}
public void setNs(int ns) {
this.ns = ns;
}
public void setQGapBases(int qGapBases) {
this.qGapBases = qGapBases;
}
public void setTGapBases(int tGapBases) {
this.tGapBases = tGapBases;
}
public int getTSize() {
return tSize;
}
public int getMatch() {
return match;
}
public int getMisMatch() {
return misMatch;
}
public int getRepMatch() {
return repMatch;
}
public int getQNumInsert() {
return qNumInsert;
}
public int getTNumInsert() {
return tNumInsert;
}
public int getQGapCount() {
return qGapCount;
}
public int getTGapCount() {
return tGapCount;
}
public int getqSize() {
return qSize;
}
public int getNs() {
return ns;
}
public int getQGapBases() {
return qGapBases;
}
public int getTGapBases() {
return tGapBases;
}
public void setText(String text) {
this.text = text;
}
public String getText() {
return text;
}
}