/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* TrackRenderer.java
*
* Created on Sep 6, 2007, 10:07:39 AM
*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.renderer;
import org.broad.igv.feature.LocusScore;
import org.broad.igv.prefs.PreferencesManager;
import org.broad.igv.track.RenderContext;
import org.broad.igv.track.Track;
import java.awt.*;
import java.util.List;
import static org.broad.igv.prefs.Constants.ENABLE_ANTIALISING;
/**
* @author jrobinso
*/
public class LineplotRenderer extends XYPlotRenderer {
/**
* Render the track in the given rectangle.
*
* @param track
* @param locusScores
* @param context
* @param arect
*/
@Override
public void renderScores(Track track, List<LocusScore> locusScores, RenderContext context, Rectangle arect) {
Rectangle adjustedRect = calculateDrawingRect(arect);
double origin = context.getOrigin();
double locScale = context.getScale();
Color posColor = track.getColor();
Color negColor = track.getAltColor();
Graphics2D gPos = context.getGraphic2DForColor(posColor);
Graphics2D gNeg = context.getGraphic2DForColor(negColor);
if (PreferencesManager.getPreferences().getAsBoolean(ENABLE_ANTIALISING)) {
gPos.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
gNeg.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_ON);
}
// Get the Y axis definition, consisting of minimum, maximum, and base value. Often
// the base value is == min value which is == 0.
DataRange axisDefinition = track.getDataRange();
float maxValue = (float) axisDefinition.getMaximum();
float baseValue = (float) axisDefinition.getBaseline();
float minValue = (float) axisDefinition.getMinimum();
// Calculate the Y scale factor.
double yScaleFactor = adjustedRect.getHeight() / (maxValue - minValue);
int lastPx = 0;
int lastPy = Integer.MIN_VALUE;
for (LocusScore score : locusScores) {
// Note -- don't cast these to an int until the range is checked.
// could get an overflow.
double x = ((score.getStart() - origin) / locScale);
double dx = (score.getEnd() - score.getStart()) / locScale;
float dataY = score.getScore();
// Compute the pixel y location.
double y = adjustedRect.getY() + (maxValue - dataY) * yScaleFactor;
if ((x + dx < 0 || lastPy == Integer.MIN_VALUE)) {
// Offscreen. Just record the points
lastPx = (int) (x + dx);
lastPy = (int) (y);
continue;
}
// Missing data in a dataset is signifed by NaN. Just skip these.
if (!Float.isNaN(dataY)) {
int pX = (int) x;
int pY = (int) y;
double slope = ((double) pY - lastPy) / (pX - lastPx);
int clippedLastPX = lastPx;
int clippedLastPY = lastPy;
if (lastPy < adjustedRect.y || lastPy > (adjustedRect.y + adjustedRect.height)) {
clippedLastPY = (lastPy < adjustedRect.y) ? adjustedRect.y : adjustedRect.y + adjustedRect.height;
clippedLastPX = lastPx + (int) ((clippedLastPY - lastPy) / slope);
}
int clippedPX = pX;
int clippedPY = pY;
// Clip and interpolate if neccessary
if (pY < adjustedRect.y || pY > (adjustedRect.y + adjustedRect.height)) {
clippedPY = (pY < adjustedRect.getMinY()) ? adjustedRect.y : adjustedRect.y + adjustedRect.height;
clippedPX = lastPx + (int) ((clippedPY - lastPy) / slope);
}
Graphics2D g = (dataY >= 0) ? gPos : gNeg;
g.drawLine(clippedLastPX, clippedLastPY, clippedPX, clippedPY);
if (dx >= 1 && (clippedPY == pY)) {
g.drawLine(pX, clippedPY, (int) (pX + dx), clippedPY);
}
lastPx = (int) (pX + dx);
lastPy = (int) pY;
if (lastPx > adjustedRect.getMaxX()) {
break;
}
}
}
gPos.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_DEFAULT);
gNeg.setRenderingHint(RenderingHints.KEY_ANTIALIASING, RenderingHints.VALUE_ANTIALIAS_DEFAULT);
}
}