/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* TrackPanel.java
*
* Created on Sep 5, 2007, 4:09:39 PM
*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.ui.panel;
//~--- non-JDK imports --------------------------------------------------------
import org.apache.log4j.Logger;
import org.broad.igv.prefs.Constants;
import org.broad.igv.prefs.PreferencesManager;
import org.broad.igv.track.AttributeManager;
import org.broad.igv.track.Track;
import org.broad.igv.track.TrackClickEvent;
import org.broad.igv.track.TrackGroup;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.UIConstants;
import org.broad.igv.ui.util.Packable;
import javax.swing.event.MouseInputAdapter;
import java.awt.*;
import java.awt.event.MouseEvent;
import java.util.*;
import java.util.List;
/**
* @author jrobinso
*/
public class AttributePanel extends TrackPanelComponent implements Packable, Paintable {
private static Logger log = Logger.getLogger(AttributePanel.class);
/**
* Constructs ...
*/
public AttributePanel(TrackPanel trackPanel) {
super(trackPanel);
setBackground(Color.lightGray);
setBorder(javax.swing.BorderFactory.createLineBorder(Color.black));
init();
}
@Override
protected void paintComponent(Graphics g) {
super.paintComponent(g);
Rectangle visibleRect = getVisibleRect();
removeMousableRegions();
paintOffscreen((Graphics2D) g, visibleRect);
}
public void paintOffscreen(Graphics2D g, Rectangle rect) {
List<String> names = AttributeManager.getInstance().getAttributeNames();
if (names == null) {
return;
}
final Set<String> hiddenAttributes = IGV.getInstance().getSession().getHiddenAttributes();
if (hiddenAttributes != null) names.removeAll(hiddenAttributes);
if (names.size() > 0) {
// Get the current tracks
TrackPanel trackPanel = (TrackPanel) getParent();
Collection<TrackGroup> groups = trackPanel.getGroups();
if (!groups.isEmpty()) {
// int attributeColumnWidth = getAttributeColumnWidth();
final Graphics2D graphics2D = (Graphics2D) g.create();
graphics2D.setColor(Color.BLACK);
final Graphics2D greyGraphics = (Graphics2D) g.create();
greyGraphics.setColor(UIConstants.LIGHT_GREY);
final Graphics2D borderGraphics = (Graphics2D) g.create();
borderGraphics.setColor(Color.lightGray);
final int left = AttributeHeaderPanel.COLUMN_BORDER_WIDTH;
int regionY = 0;
final int bottom = rect.y + rect.height;
for (Iterator<TrackGroup> groupIter = groups.iterator(); groupIter.hasNext(); ) {
TrackGroup group = groupIter.next();
// Out of view?
if (regionY > bottom) {
break;
}
if (group.isVisible()) {
if (groups.size() > 1) {
greyGraphics.fillRect(0, regionY + 1, getWidth(), UIConstants.groupGap - 1);
regionY += UIConstants.groupGap;
}
if (group.isDrawBorder()) {
g.drawLine(0, regionY - 1, getWidth(), regionY - 1);
}
for (Track track : group.getVisibleTracks()) {
if (track == null) continue;
int trackHeight = track.getHeight();
if (regionY > bottom) {
break;
}
if (track.isVisible()) {
int border = trackHeight < 5 ? 0 : 1;
if (regionY + trackHeight >= rect.y) {
Rectangle trackRectangle = new Rectangle(left, regionY+border, getWidth(), trackHeight-border);
track.renderAttributes(graphics2D, trackRectangle, rect, names, mouseRegions);
//regionY = draw(names, track, regionX, regionY, attributeColumnWidth, track.getHeight(), graphics2D);
}
regionY += trackHeight;
}
}
if (group.isDrawBorder()) {
g.drawLine(0, regionY, getWidth(), regionY);
}
}
}
// Border
final int colWidth = AttributeHeaderPanel.ATTRIBUTE_COLUMN_WIDTH + AttributeHeaderPanel.COLUMN_BORDER_WIDTH;
for (int x = 1; x < rect.x + rect.width; x += colWidth) {
borderGraphics.fillRect(x + AttributeHeaderPanel.ATTRIBUTE_COLUMN_WIDTH, rect.y,
AttributeHeaderPanel.COLUMN_BORDER_WIDTH, rect.height);
}
graphics2D.dispose();
greyGraphics.dispose();
borderGraphics.dispose();
}
}
}
/*private int draw(List<String> names, Track track, int trackX, int trackY, int trackWidth, int trackHeight,
Graphics2D graphics) {
for (String name : names) {
String key = name.toUpperCase();
String attributeValue = track.getAttributeValue(key);
if (attributeValue != null) {
Rectangle trackRectangle = new Rectangle(trackX, trackY, trackWidth, trackHeight);
graphics.setColor(AttributeManager.getInstance().getColor(key, attributeValue));
graphics.fill(trackRectangle);
addMousableRegion(new MouseableRegion(trackRectangle, key, attributeValue));
}
trackX += trackWidth + AttributeHeaderPanel.COLUMN_BORDER_WIDTH;
}
trackY += trackHeight;
return trackY;
}*/
private void init() {
setCursor(Cursor.getPredefinedCursor(Cursor.HAND_CURSOR));
if (!PreferencesManager.getPreferences().getAsBoolean(Constants.SHOW_ATTRIBUTE_VIEWS_KEY)) {
setSize(0, getHeight());
}
setBackground(new java.awt.Color(255, 255, 255));
setBorder(javax.swing.BorderFactory.createLineBorder(new java.awt.Color(0, 0, 0)));
setPreferredSize(new java.awt.Dimension(0, 0));
setVerifyInputWhenFocusTarget(false);
MouseInputAdapter mouseAdapter = new AttributePanelMouseAdapter();
addMouseMotionListener(mouseAdapter);
addMouseListener(mouseAdapter);
}
/**
* Method description
*
* @param x
* @param y
* @return
*/
public String getPopupMenuTitle(int x, int y) {
Collection<Track> selectedTracks = getSelectedTracks();
int selectedTrackCount = selectedTracks.size();
if (selectedTrackCount == 1) {
return selectedTracks.iterator().next().getName();
} else {
String keyValue = "";
for (MouseableRegion region : this.getMouseRegions()) {
if (region.containsPoint(x, y)) {
keyValue = region.getText();
}
}
return keyValue + " (" + selectedTrackCount + " tracks)";
}
}
/**
* Method description
*
* @param x
* @param y
* @return
*/
public String getMouseDoc(int x, int y) {
List<MouseableRegion> mouseRegions = getMouseRegions();
for (MouseableRegion mr : mouseRegions) {
if (mr.containsPoint(x, y)) {
return mr.getText();
}
}
return "";
}
/**
* Method description
*
* @return
*/
public int getAttributeColumnWidth() {
return AttributeHeaderPanel.ATTRIBUTE_COLUMN_WIDTH;
}
// Packable interface
private int calculatePackWidth() {
if (!PreferencesManager.getPreferences().getAsBoolean(Constants.SHOW_ATTRIBUTE_VIEWS_KEY)) {
return 0;
}
HashSet<String> attributeKeys = new HashSet(AttributeManager.getInstance().getAttributeNames());
final Set<String> hiddenAttributes = IGV.getInstance().getSession().getHiddenAttributes();
if (hiddenAttributes != null) attributeKeys.removeAll(hiddenAttributes);
int attributeCount = attributeKeys.size();
int packWidth = (attributeCount) * (AttributeHeaderPanel.ATTRIBUTE_COLUMN_WIDTH +
AttributeHeaderPanel.COLUMN_BORDER_WIDTH) + AttributeHeaderPanel.COLUMN_BORDER_WIDTH;
return packWidth;
}
/**
* Method description
*
* @param x
* @param y
* @param width
* @param height
*/
@Override
public void setBounds(int x, int y, int width, int height) {
super.setBounds(x, y, calculatePackWidth(), height);
}
/**
* Method description
*/
public void packComponent() {
int newWidth = calculatePackWidth();
Dimension dimension = getSize();
dimension = new Dimension(newWidth, dimension.height);
setMinimumSize(dimension);
setMaximumSize(dimension);
setSize(dimension);
setPreferredSize(dimension);
}
class AttributePanelMouseAdapter extends MouseInputAdapter {
int lastMousePressX = 0;
public void mousePressed(final MouseEvent e) {
if (log.isDebugEnabled()) {
log.debug("Enter mousePressed");
}
clearTrackSelections();
selectTracks(e);
if (e.isPopupTrigger()) {
TrackClickEvent te = new TrackClickEvent(e, null);
openPopupMenu(te);
}
IGV.getInstance().repaintNamePanels();
}
public void mouseReleased(MouseEvent e) {
// Show Popup Menu. The track selection is cleared afterwards.
if (e.isPopupTrigger()) {
TrackClickEvent te = new TrackClickEvent(e, null);
openPopupMenu(te);
}
}
public void mouseMoved(MouseEvent e) {
setToolTipText(getMouseDoc(e.getX(), e.getY()));
}
}
}