/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package org.broad.igv.gs; /** * @author Jim Robinson * @date 8/10/11 */ /* * To change this template, choose Tools | Templates * and open the template in the editor. */ import org.apache.log4j.Logger; import org.broad.igv.gs.GSFileBrowser; import org.broad.igv.gs.dm.DMUtils; import org.broad.igv.session.Session; import org.broad.igv.session.SessionWriter; import org.broad.igv.ui.IGV; import org.broad.igv.ui.UIConstants; import org.broad.igv.ui.WaitCursorManager; import org.broad.igv.ui.action.MenuAction; import org.broad.igv.ui.action.SaveSessionMenuAction; import javax.swing.*; import java.awt.event.ActionEvent; import java.io.File; import java.io.FileOutputStream; /** * @author jrobinso */ public class GSSaveSessionMenuAction extends MenuAction { static Logger log = Logger.getLogger(SaveSessionMenuAction.class); // TODO -- The batch referenceFrame is likely to be used by many actions. Move this // member to a base class ? IGV mainFrame; /** * Constructs ... * * @param label * @param mainFrame */ public GSSaveSessionMenuAction(String label, IGV mainFrame) { super(label); this.mainFrame = mainFrame; setToolTipText("Save session to GenomeSpace"); } /** * Method description * * @param e */ @Override public void actionPerformed(ActionEvent e) { WaitCursorManager.CursorToken token = null; try { String currentSessionFilePath = mainFrame.getSession().getPath(); String initFile = currentSessionFilePath == null ? UIConstants.DEFAULT_SESSION_FILE : currentSessionFilePath; String sessionName = (new File(initFile)).getName(); GSFileBrowser gsFileBrowser = new GSFileBrowser(IGV.getMainFrame(), GSFileBrowser.Mode.SAVE); gsFileBrowser.setVisible(true); String gsPath = gsFileBrowser.getPath(); if (gsPath == null) return; if (!gsPath.endsWith(".xml")) { gsPath += ".xml"; } File tmpDir = new File(System.getProperty("java.io.tmpdir"), System.getProperty("user.name")); if(!tmpDir.exists()) { tmpDir.mkdirs(); } sessionName = (new File(gsPath)).getName(); final File sessionFile = new File(tmpDir, sessionName); mainFrame.setStatusBarMessage("Saving session to " + sessionFile.getAbsolutePath()); FileOutputStream out = null; token = WaitCursorManager.showWaitCursor(); Session currentSession = mainFrame.getSession(); currentSession.setPath(sessionFile.getAbsolutePath()); (new SessionWriter()).saveSession(currentSession, sessionFile); DMUtils.uploadFile(sessionFile, gsPath); sessionFile.delete(); } catch (Exception e2) { JOptionPane.showMessageDialog(mainFrame.getMainFrame(), "Error saving session file " + "(" + e2.getMessage() + ")"); log.error("Failed to save session!", e2); } finally { if (token != null) WaitCursorManager.removeWaitCursor(token); mainFrame.resetStatusMessage(); } } }