/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
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*/
package org.broad.igv.feature;
import org.broad.igv.track.WindowFunction;
/**
* @author jrobinso
*/
public interface LocusScore extends htsjdk.tribble.Feature {
public void setStart(int start);
public void setEnd(int end);
public float getScore();
/**
* Return a string to be used for popup text. The WindowFunction is passed
* in so it can be used to annotate the value. The LocusScore object itself
* does not "know" from what window function it was derived
*
* @param position Zero-based genome position
* @param mouseX
* @param windowFunction
* @return
*/
public String getValueString(double position, int mouseX, WindowFunction windowFunction);
}