/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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package org.broad.igv.track;
import org.broad.igv.feature.Exon;
import org.broad.igv.feature.IExon;
import org.broad.igv.feature.IGVFeature;
import org.broad.igv.renderer.SelectableFeatureRenderer;
import htsjdk.tribble.Feature;
import java.awt.event.MouseEvent;
import java.util.HashSet;
import java.util.Set;
/**
* A FeatureTrack designed for selecting features/exons. Created to support Sashimi plot
* window
* User: jacob
* Date: 2013-Jan-28
*/
public class SelectableFeatureTrack extends FeatureTrack {
protected Set<IExon> selectedExons = new HashSet<IExon>();
public SelectableFeatureTrack(FeatureTrack geneTrack) {
super(geneTrack);
this.setRendererClass(SelectableFeatureRenderer.class);
}
@Override
public boolean handleDataClick(TrackClickEvent te) {
MouseEvent e = te.getMouseEvent();
Feature f = getFeatureAtMousePosition(te);
//We allow any of these modifier keys for multi-select
if (!e.isShiftDown() && !e.isControlDown() && !e.isMetaDown()) {
clearSelectedExons();
}
boolean foundExon = false;
if (f != null && f instanceof IGVFeature) {
selectedFeature = (IGVFeature) f;
double location = te.getFrame().getChromosomePosition(e.getX());
if (selectedFeature.getExons() != null) {
for (Exon exon : selectedFeature.getExons()) {
if (location >= exon.getStart() && location < exon.getEnd()) {
selectedExons.add(exon);
foundExon = true;
break;
}
}
}
}
((SelectableFeatureRenderer) getRenderer()).setSelectedExons(selectedExons);
return foundExon;
}
private void clearSelectedExons() {
this.selectedExons.clear();
}
public Set<IExon> getSelectedExons() {
return selectedExons;
}
}