/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ /** * Created by IntelliJ IDEA. * User: martind * Date: Dec 20, 2009 * Time: 10:37:43 PM * To change this template use File | Settings | File Templates. */ package org.broad.igv.bbfile; import org.apache.log4j.Logger; /* * Container class for B+ tree leaf node. * */ public class BPTreeLeafNodeItem implements BPTreeNodeItem { private static Logger log = Logger.getLogger(BPTreeLeafNodeItem.class); private final boolean isLeafItem = true; private long leafIndex; // leaf index in B+ tree item list // B+ Tree Leaf Node Item entities - BBFile Table G private String chromKey; // B+ tree node item is associated by key private int chromID; // numeric mChromosome/contig ID private int chromSize; // number of bases in mChromosome/contig /* * Constructs a B+ tree leaf node item with the supplied information. * * Parameters: * leafIndex - leaf item index * chromKey - chromosome/contig name key * chromID - chromosome ID assigned to the chromosome name key * chromsize - number of bases in the chromosome/contig * */ public BPTreeLeafNodeItem(long leafIndex, String chromKey, int chromID, int chromSize) { this.leafIndex = leafIndex; this.chromKey = chromKey; this.chromID = chromID; this.chromSize = chromSize; } /* * Method returns the index assigned to this node item. * * Returns: * index assigned to this node item * */ public long getItemIndex() { return leafIndex; } /* * Method returns if this node is a leaf item. * * Returns: * true because node is a leaf item * */ public boolean isLeafItem() { return isLeafItem; } /* * Method returns the chromosome name key assigned to this node item. * * Returns: * chromosome name key assigned to this node item * */ public String getChromKey() { return chromKey; } /* * Method compares supplied chromosome key with leaf node key. * * Parameters: * chromKey - chromosome name ley to compare * * Returns: * true, if keys are equal; false if keys are different * */ public boolean chromKeysMatch(String chromKey) { String thisKey = this.chromKey; String thatKey = chromKey.trim(); return thisKey.equals(thatKey); } public void print() { log.debug("B+ tree leaf node item number " + leafIndex); log.debug("Key value = " + chromKey); log.debug("ChromID = " + chromID); log.debug("Chromsize = " + chromSize); } // *** BPTreeLeafNodeItem specific methods *** public int getChromID() { return chromID; } public int getChromSize() { return chromSize; } }