/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package org.broad.igv.gwas;
import org.broad.igv.feature.genome.Genome;
import org.junit.Test;
import static junit.framework.Assert.assertEquals;
/**
* @author jrobinso
* Date: 4/26/13
* Time: 1:36 PM
*/
public class EQTLCodecTest {
@Test
public void testDecode() throws Exception {
Genome genome = null; // Genome not needed for this test
EQTLCodec codec = new EQTLCodec(genome);
String line = "rs4700772\t5\t180341845\tENSG00000168903.7\tBTNL3\t180415845\t129.858921455635\t0\t1.61918925670937e-27";
EQTLFeature f = codec.decode(line);
assertEquals("rs4700772", f.getSnp());
assertEquals("ENSG00000168903.7", f.getGeneId());
assertEquals("BTNL3", f.getGeneName());
assertEquals("5", f.getChr());
assertEquals(180341844, f.getStart());
assertEquals(180341845, f.getEnd());
}
}