/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ /* * To change this template, choose Tools | Templates * and open the template in the editor. */ package org.broad.igv.ui; import org.broad.igv.track.Track; import org.broad.igv.util.Filter; import org.broad.igv.util.FilterElement; import java.util.ArrayList; import java.util.Iterator; import java.util.List; /** * @author eflakes */ public class TrackFilter extends Filter { private boolean showAll = false; List<Track> currentTrackList; public TrackFilter(String name, List<TrackFilterElement> elements) { super(name, elements); } public void clearTracks() { currentTrackList = null; } public void addTracks(List<Track> tracks) { if (tracks == null || tracks.isEmpty()) return; if (currentTrackList == null) { currentTrackList = new ArrayList<Track>(tracks); } } /** * Evaluate the TrackFilterElement set. * * @return */ @Override public void evaluate() { if (currentTrackList == null || currentTrackList.isEmpty()) return; boolean filterEnabled = isEnabled(); for (Track track : currentTrackList) { // Must start as null which means no previous results Boolean result = null; // If filter is not enabled just show all tracks if (!filterEnabled) { track.setVisible(!filterEnabled); continue; } if (track.isFilterable()) { // Evaluate tracks Iterator iterator = getFilterElements(); while (iterator.hasNext()) { FilterElement element = (FilterElement) iterator.next(); result = element.evaluate(track, result); } track.setVisible(result); } } } }