/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
/*
* HeatmapScaleDialog.java
*
* Created on Sep 30, 2009, 1:10:50 PM
*/
package org.broad.igv.ui;
import org.broad.igv.prefs.Constants;
import org.broad.igv.prefs.PreferencesManager;
import org.broad.igv.renderer.ContinuousColorScale;
import org.broad.igv.track.TrackType;
import org.broad.igv.ui.color.ColorChooserPanel;
import org.jdesktop.layout.GroupLayout;
import org.jdesktop.layout.LayoutStyle;
import javax.swing.*;
import java.awt.*;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.event.FocusAdapter;
import java.awt.event.FocusEvent;
import java.text.DecimalFormat;
/**
* @author jrobinso
*/
public class HeatmapScaleDialog extends javax.swing.JDialog {
boolean canceled = false;
ContinuousColorScale colorScale;
/**
* Creates new form DataScaleDialog2
*/
public HeatmapScaleDialog(java.awt.Frame parent, ContinuousColorScale colorScale) {
super(parent, true);
this.colorScale = new ContinuousColorScale(colorScale);
initComponents();
minField.setText(String.valueOf(colorScale.getMinimum()));
maxField.setText(String.valueOf(colorScale.getMaximum()));
neutralFromField.setText(String.valueOf(colorScale.getNegStart()));
neutralToField.setText(String.valueOf(colorScale.getPosStart()));
negColor.setSelectedColor(colorScale.getMinColor());
posColor.setSelectedColor(colorScale.getMaxColor());
midColor.setSelectedColor(colorScale.getMidColor());
}
public boolean isCanceled() {
return canceled;
}
public ContinuousColorScale getColorScale() {
return colorScale;
}
/**
* This method is called from within the constructor to
* initialize the form.
* WARNING: Do NOT modify this code. The content of this method is
* always regenerated by the Form Editor.
*/
private void initComponents() {
jPanel2 = new JPanel();
jLabel1 = new JLabel();
jLabel2 = new JLabel();
jLabel3 = new JLabel();
jLabel4 = new JLabel();
minField = new JTextField();
maxField = new JTextField();
neutralFromField = new JTextField();
neutralToField = new JTextField();
negColor = new ColorChooserPanel();
posColor = new ColorChooserPanel();
midColor = new ColorChooserPanel();
legendPanel = new LegendPanel();
panel3 = new JPanel();
jPanel3 = new JPanel();
cancelButton = new JButton();
okButton1 = new JButton();
label1 = new JLabel();
//======== this ========
setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
Container contentPane = getContentPane();
contentPane.setLayout(null);
//======== jPanel2 ========
{
jPanel2.setBorder(null);
//---- jLabel1 ----
jLabel1.setText("Minimum");
//---- jLabel2 ----
jLabel2.setText("Maximum");
//---- jLabel3 ----
jLabel3.setText("Midrange");
//---- jLabel4 ----
jLabel4.setText("to");
//---- minField ----
minField.setText("jTextField1");
minField.setPreferredSize(new Dimension(120, 28));
minField.addFocusListener(new FocusAdapter() {
@Override
public void focusLost(FocusEvent e) {
minFieldFocusLost(e);
}
});
//---- maxField ----
maxField.setText("jTextField2");
maxField.setPreferredSize(new Dimension(120, 28));
maxField.addFocusListener(new FocusAdapter() {
@Override
public void focusLost(FocusEvent e) {
maxFieldFocusLost(e);
}
});
//---- neutralFromField ----
neutralFromField.setText("jTextField3");
neutralFromField.setPreferredSize(new Dimension(120, 28));
neutralFromField.addFocusListener(new FocusAdapter() {
@Override
public void focusLost(FocusEvent e) {
neutralFromFieldFocusLost(e);
}
});
//---- neutralToField ----
neutralToField.setText("jTextField4");
neutralToField.setPreferredSize(new Dimension(120, 28));
neutralToField.addFocusListener(new FocusAdapter() {
@Override
public void focusLost(FocusEvent e) {
neutralToFieldFocusLost(e);
}
});
//---- negColor ----
negColor.setPreferredSize(new Dimension(60, 28));
negColor.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
setNegColorAction(e);
}
});
//---- posColor ----
posColor.setPreferredSize(new Dimension(60, 28));
posColor.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
posColorActionPerformed(e);
}
});
//---- midColor ----
midColor.setPreferredSize(new Dimension(60, 28));
midColor.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
midColorActionPerformed(e);
}
});
//======== legendPanel ========
{
legendPanel.setBackground(new Color(238, 238, 238));
legendPanel.setOpaque(false);
GroupLayout legendPanelLayout = new GroupLayout(legendPanel);
legendPanel.setLayout(legendPanelLayout);
legendPanelLayout.setHorizontalGroup(
legendPanelLayout.createParallelGroup()
.add(0, 443, Short.MAX_VALUE)
);
legendPanelLayout.setVerticalGroup(
legendPanelLayout.createParallelGroup()
.add(0, 54, Short.MAX_VALUE)
);
}
//======== panel3 ========
{
panel3.setLayout(null);
{ // compute preferred size
Dimension preferredSize = new Dimension();
for (int i = 0; i < panel3.getComponentCount(); i++) {
Rectangle bounds = panel3.getComponent(i).getBounds();
preferredSize.width = Math.max(bounds.x + bounds.width, preferredSize.width);
preferredSize.height = Math.max(bounds.y + bounds.height, preferredSize.height);
}
Insets insets = panel3.getInsets();
preferredSize.width += insets.right;
preferredSize.height += insets.bottom;
panel3.setMinimumSize(preferredSize);
panel3.setPreferredSize(preferredSize);
}
}
GroupLayout jPanel2Layout = new GroupLayout(jPanel2);
jPanel2.setLayout(jPanel2Layout);
jPanel2Layout.setHorizontalGroup(
jPanel2Layout.createParallelGroup()
.add(jPanel2Layout.createSequentialGroup()
.add(panel3, GroupLayout.PREFERRED_SIZE, 26, GroupLayout.PREFERRED_SIZE)
.add(6, 6, 6)
.add(jPanel2Layout.createParallelGroup()
.add(negColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(posColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(midColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE))
.add(6, 6, 6)
.add(jPanel2Layout.createParallelGroup()
.add(jLabel1, GroupLayout.PREFERRED_SIZE, 62, GroupLayout.PREFERRED_SIZE)
.add(jLabel2)
.add(jLabel3, GroupLayout.PREFERRED_SIZE, 62, GroupLayout.PREFERRED_SIZE))
.add(6, 6, 6)
.add(jPanel2Layout.createParallelGroup()
.add(minField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(maxField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(neutralFromField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE))
.add(6, 6, 6)
.add(jLabel4)
.add(6, 6, 6)
.add(neutralToField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE))
.add(GroupLayout.TRAILING, jPanel2Layout.createSequentialGroup()
.addContainerGap(GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(legendPanel, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.addContainerGap())
);
jPanel2Layout.setVerticalGroup(
jPanel2Layout.createParallelGroup()
.add(jPanel2Layout.createSequentialGroup()
.add(jPanel2Layout.createParallelGroup()
.add(panel3, GroupLayout.PREFERRED_SIZE, 94, GroupLayout.PREFERRED_SIZE)
.add(jPanel2Layout.createSequentialGroup()
.add(negColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(posColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(midColor, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE))
.add(jPanel2Layout.createSequentialGroup()
.add(jLabel1, GroupLayout.PREFERRED_SIZE, 28, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(jLabel2, GroupLayout.PREFERRED_SIZE, 28, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(jLabel3, GroupLayout.PREFERRED_SIZE, 28, GroupLayout.PREFERRED_SIZE))
.add(jPanel2Layout.createSequentialGroup()
.add(minField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(maxField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(5, 5, 5)
.add(neutralFromField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE))
.add(jPanel2Layout.createSequentialGroup()
.add(66, 66, 66)
.add(jLabel4, GroupLayout.PREFERRED_SIZE, 28, GroupLayout.PREFERRED_SIZE))
.add(jPanel2Layout.createSequentialGroup()
.add(66, 66, 66)
.add(neutralToField, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)))
.add(41, 41, 41)
.add(legendPanel, GroupLayout.PREFERRED_SIZE, GroupLayout.DEFAULT_SIZE, GroupLayout.PREFERRED_SIZE)
.add(41, 41, 41))
);
}
contentPane.add(jPanel2);
jPanel2.setBounds(10, 70, 465, 230);
//======== jPanel3 ========
{
//---- cancelButton ----
cancelButton.setText("Cancel");
cancelButton.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
cancelButtonActionPerformed(e);
}
});
//---- okButton1 ----
okButton1.setText("OK");
okButton1.addActionListener(new ActionListener() {
public void actionPerformed(ActionEvent e) {
okButton1ActionPerformed(e);
}
});
GroupLayout jPanel3Layout = new GroupLayout(jPanel3);
jPanel3.setLayout(jPanel3Layout);
jPanel3Layout.setHorizontalGroup(
jPanel3Layout.createParallelGroup()
.add(GroupLayout.TRAILING, jPanel3Layout.createSequentialGroup()
.addContainerGap(291, Short.MAX_VALUE)
.add(cancelButton)
.addPreferredGap(LayoutStyle.RELATED)
.add(okButton1)
.add(12, 12, 12))
);
jPanel3Layout.setVerticalGroup(
jPanel3Layout.createParallelGroup()
.add(GroupLayout.TRAILING, jPanel3Layout.createSequentialGroup()
.addContainerGap(GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.add(jPanel3Layout.createParallelGroup(GroupLayout.BASELINE)
.add(okButton1)
.add(cancelButton))
.add(8, 8, 8))
);
}
contentPane.add(jPanel3);
jPanel3.setBounds(10, 295, 470, jPanel3.getPreferredSize().height);
//---- label1 ----
label1.setText("Heatmap settings for selected tracks");
contentPane.add(label1);
label1.setBounds(40, 10, 345, label1.getPreferredSize().height);
{ // compute preferred size
Dimension preferredSize = new Dimension();
for (int i = 0; i < contentPane.getComponentCount(); i++) {
Rectangle bounds = contentPane.getComponent(i).getBounds();
preferredSize.width = Math.max(bounds.x + bounds.width, preferredSize.width);
preferredSize.height = Math.max(bounds.y + bounds.height, preferredSize.height);
}
Insets insets = contentPane.getInsets();
preferredSize.width += insets.right;
preferredSize.height += insets.bottom;
contentPane.setMinimumSize(preferredSize);
contentPane.setPreferredSize(preferredSize);
}
pack();
setLocationRelativeTo(getOwner());
}
private void cancelButtonActionPerformed(java.awt.event.ActionEvent evt) {
canceled = true;
setVisible(false);
}
private void okButton1ActionPerformed(java.awt.event.ActionEvent evt) {
setVisible(false);
}
private void setNegColorAction(java.awt.event.ActionEvent evt) {
colorScale.setMinColor(negColor.getSelectedColor());
legendPanel.repaint();
}
private void posColorActionPerformed(java.awt.event.ActionEvent evt) {
colorScale.setMaxColor(posColor.getSelectedColor());
legendPanel.repaint();
}
private void midColorActionPerformed(java.awt.event.ActionEvent evt) {
colorScale.setMidColor(midColor.getSelectedColor());
legendPanel.repaint();
}
private void minFieldFocusLost(java.awt.event.FocusEvent evt) {
minFieldActionPerformed(null);
}
private void maxFieldFocusLost(java.awt.event.FocusEvent evt) {//GEN-FIRST:event_maxFieldFocusLost
maxFieldActionPerformed(null);
}//GEN-LAST:event_maxFieldFocusLost
private void neutralFromFieldFocusLost(java.awt.event.FocusEvent evt) {//GEN-FIRST:event_neutralFromFieldFocusLost
neutralFromFieldActionPerformed(null);
}//GEN-LAST:event_neutralFromFieldFocusLost
private void neutralToFieldFocusLost(java.awt.event.FocusEvent evt) {//GEN-FIRST:event_neutralToFieldFocusLost
neutralToFieldActionPerformed(null);
}//GEN-LAST:event_neutralToFieldFocusLost
private void minFieldActionPerformed(java.awt.event.ActionEvent evt) {
try {
colorScale.setNegEnd(Double.parseDouble(minField.getText()));
legendPanel.repaint();
}
catch (NumberFormatException e) {
minField.setText(String.valueOf(colorScale.getMinimum()));
}
}
private void maxFieldActionPerformed(java.awt.event.ActionEvent evt) {
try {
colorScale.setPosEnd(Double.parseDouble(maxField.getText()));
legendPanel.repaint();
}
catch (NumberFormatException e) {
maxField.setText(String.valueOf(colorScale.getMaximum()));
}
}
private void neutralFromFieldActionPerformed(java.awt.event.ActionEvent evt) {
try {
colorScale.setNegStart(Double.parseDouble(neutralFromField.getText()));
legendPanel.repaint();
}
catch (NumberFormatException e) {
neutralFromField.setText(String.valueOf(colorScale.getNegStart()));
}
}
private void neutralToFieldActionPerformed(java.awt.event.ActionEvent evt) {
try {
colorScale.setPosStart(Double.parseDouble(neutralToField.getText()));
legendPanel.repaint();
}
catch (NumberFormatException e) {
neutralToField.setText(String.valueOf(colorScale.getPosStart()));
}
}
public static void main(String args[]) {
java.awt.EventQueue.invokeLater(new Runnable() {
public void run() {
HeatmapScaleDialog dialog = new HeatmapScaleDialog(new javax.swing.JFrame(),
(ContinuousColorScale) PreferencesManager.getPreferences().getDefaultColorScale(TrackType.COPY_NUMBER));
dialog.addWindowListener(new java.awt.event.WindowAdapter() {
public void windowClosing(java.awt.event.WindowEvent e) {
System.exit(0);
}
});
dialog.setVisible(true);
}
});
}
private JPanel jPanel2;
private JLabel jLabel1;
private JLabel jLabel2;
private JLabel jLabel3;
private JLabel jLabel4;
private JTextField minField;
private JTextField maxField;
private JTextField neutralFromField;
private JTextField neutralToField;
private ColorChooserPanel negColor;
private ColorChooserPanel posColor;
private ColorChooserPanel midColor;
private JPanel legendPanel;
private JPanel panel3;
private JPanel jPanel3;
private JButton cancelButton;
private JButton okButton1;
private JLabel label1;
class LegendPanel extends JPanel {
public void paint(Graphics g) {
super.paint(g);
if (colorScale == null) {
return;
}
DecimalFormat formatter = new DecimalFormat("0.0");
Graphics2D g2D = null;
try {
g2D = (Graphics2D) g.create();
if (PreferencesManager.getPreferences().getAsBoolean(Constants.ENABLE_ANTIALISING)) {
g2D.setRenderingHint(RenderingHints.KEY_TEXT_ANTIALIASING, RenderingHints.VALUE_TEXT_ANTIALIAS_ON);
}
g2D.setFont(FontManager.getFont(10));
double max = colorScale.getMaximum();
double min = colorScale.getMinimum();
double neutralFrom = colorScale.getNegStart();
double neutralTo = colorScale.getPosStart();
// Width and height of the legend.
int margin = 10;
int w = getWidth() - 2 * margin;
int h = getHeight() / 2;
// Want to vary value from min -> max over legend
int npts = 50;
double dx = ((double) w) / npts;
double delta = (max - min) / (npts - 1);
// Paint gradient
for (int i = 0; i < npts - 1; i++) {
double val = min + i * delta;
Color c = colorScale.getColor((float) val);
g2D.setColor(c);
int x0 = margin + (int) (i * dx);
int x1 = margin + (int) ((i + 1) * dx);
g2D.fillRect(x0, 0, (x1 - x0), h);
}
// Paint tickmarks
double[] values = {min, neutralFrom, neutralTo, max};
double wPrime = (w - 2 * margin - dx) / (max - min);
g2D.setColor(Color.BLACK);
for (int i = 0; i < values.length; i++) {
double val = values[i];
int x0 = (int) (margin + dx + (val - min) * wPrime);
g2D.fillRect(x0, 0, 2, h);
g2D.drawString(formatter.format(val), x0 - 10, h + 15);
}
}
finally {
g2D.dispose();
}
}
}
}