/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package org.broad.igv.feature.tribble; import org.broad.igv.feature.EncodePeakFeature; import org.broad.igv.util.ResourceLocator; import htsjdk.tribble.AsciiFeatureCodec; import htsjdk.tribble.Feature; import htsjdk.tribble.FeatureCodec; import org.junit.Test; import static junit.framework.Assert.assertEquals; import static junit.framework.Assert.assertTrue; /** * @author jrobinso * Date: 1/23/14 * Time: 4:24 PM */ public class EncodePeakCodecTest { @Test public void testDecode() throws Exception { String line = "chr22\t16847690\t16857344\t.\t354\t.\t5.141275\t14.1\t-1"; EncodePeakCodec codec = new EncodePeakCodec(); AsciiFeatureCodec codec2 = new EncodePeakCodec(); assertTrue(codec.getClass() == codec2.getClass()); Feature feature = codec.decode(line); Feature feature2 = codec2.decode(line); assertEquals("chr22", feature.getChr()); } }