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* The MIT License (MIT)
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* Copyright (c) 2007-2015 Broad Institute
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package org.broad.igv.data.cufflinks;
import org.broad.igv.feature.Range;
/**
* Represents a cufflinks value from any of a fpkm tracking file as described here
* http://cufflinks.cbcb.umd.edu/manual.html#fpkm_tracking_format
* @author jrobinso
* Date: 3/8/13
* Time: 2:37 PM
*/
public class FPKMValue extends Range {
float[] fpkm;
float[] fpkmLo;
float[] fpkmHi;
String gene;
public FPKMValue(String chr, int start, int end, String gene, float[] fpkm, float[] fpkmLo, float[] fpkmHi) {
super(chr, start, end);
this.gene = gene;
assert fpkm.length == fpkmLo.length && fpkm.length == fpkmHi.length;
this.fpkm = fpkm;
this.fpkmLo = fpkmLo;
this.fpkmHi = fpkmHi;
}
public FPKMSampleValue getSampleValue(int sampleIndex){
return new FPKMSampleValue(chr, start, end, gene, fpkm[sampleIndex], fpkmLo[sampleIndex], fpkmHi[sampleIndex]);
}
public String getGene(){
return this.gene;
}
public int getNumSamples(){
return this.fpkm.length;
}
}