/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
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*/
package org.broad.igv.tools.parsers;
import org.broad.igv.track.TrackType;
/**
* @author jrobinso
*/
public interface DataConsumer {
public void setType(String type);
public void addData(String chr, int start, int end, float[] data, String name);
public void parsingComplete();
public void setTrackParameters(TrackType trackType, String trackLine, String[] trackNames);
void setTrackParameters(TrackType trackType, String trackLine, String[] trackNames, boolean b);
/**
* Set a tolerance for "sortedness" of the data. A start position can be less than
* the immediately previous start position by this amount. This is needed for
* chip-seq processing where the start position of an alignment can be artificially
* extended post sorting.
*/
public void setSortTolerance(int tolerance);
public void setAttribute(String key, String value);
}