/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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* THE SOFTWARE.
*/
package org.broad.igv.track;
import org.broad.igv.feature.Locus;
import org.broad.igv.feature.LocusScore;
import org.broad.igv.ui.panel.ReferenceFrame;
import java.util.List;
/**
* @author jrobinso
* @date Sep 28, 2010
*/
public class LoadedDataInterval<T> {
public Locus range;
private T scores;
int zoom = -1;
public LoadedDataInterval(String chr, int start, int end, T scores) {
range = new Locus(chr, start, end);
this.scores = scores;
}
public LoadedDataInterval(String chr, int start, int end, int zoom, T scores) {
range = new Locus(chr, start, end);
this.zoom = zoom;
this.scores = scores;
}
public boolean contains(String chr, int start, int end) {
return range.contains(chr, start, end);
}
public boolean contains(String chr, int start, int end, int zoom) {
return (this.zoom == -1 || this.zoom == zoom) && range.contains(chr, start, end);
}
public boolean contains(ReferenceFrame frame) {
String chr = frame.getChrName();
int start = (int) frame.getOrigin();
int end = (int) frame.getEnd();
int zoom = frame.getZoom();
return this.contains(chr, start, end, zoom);
}
public T getFeatures() {
return scores;
}
}