/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package org.broad.igv.dev; import org.broad.igv.exceptions.ParserException; /** * This interface acts as a bridge between different containers of data, * separating retrieving that data from processing. The motivation was integration * with SQL databases. * <p/> * Consider a tab-delimited text file. The standard method of parsing * is to read each line, splitting each line into a {@code String[]}, * and reading each string into a float, double, string, or whatever. * {@link StringArrayParser#getString(TContainer, TIndex)} * has TContainer = String[], and TIndex = Integer, and simply * returns the String at location given by the Integer. * <p/> * Consider the same data stored in a SQL database. Each line stores * essentially the information, although we have the advantage that * SQL columns are typed. {@link org.broad.igv.dev.db.SQLLineParserByLabel} * reads ResultSet, and uses column names (String) to identify the location. * One could also use Integers to index the columns, if desired. This way * we retain type information on columns; the data is never treated as a String * (unless it is). * <p/> * User: jacob * Date: 2012-Aug-30 * * @see org.broad.igv.dev.db.SQLLineParserByLabel * @see org.broad.igv.dev.StringArrayParser */ public interface IParser<TContainer, TIndex> { byte getByte(TContainer obj, TIndex index) throws ParserException; short getShort(TContainer obj, TIndex index) throws ParserException; int getInt(TContainer obj, TIndex index) throws ParserException; float getFloat(TContainer obj, TIndex index) throws ParserException; double getDouble(TContainer obj, TIndex index) throws ParserException; String getString(TContainer obj, TIndex index) throws ParserException; /** * Return the number of data objects contained. * For an array, this would be the length * * @param obj * @return * @throws ParserException */ int size(TContainer obj) throws ParserException; }