/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package org.broad.igv.dev;
import org.broad.igv.exceptions.ParserException;
/**
* This interface acts as a bridge between different containers of data,
* separating retrieving that data from processing. The motivation was integration
* with SQL databases.
* <p/>
* Consider a tab-delimited text file. The standard method of parsing
* is to read each line, splitting each line into a {@code String[]},
* and reading each string into a float, double, string, or whatever.
* {@link StringArrayParser#getString(TContainer, TIndex)}
* has TContainer = String[], and TIndex = Integer, and simply
* returns the String at location given by the Integer.
* <p/>
* Consider the same data stored in a SQL database. Each line stores
* essentially the information, although we have the advantage that
* SQL columns are typed. {@link org.broad.igv.dev.db.SQLLineParserByLabel}
* reads ResultSet, and uses column names (String) to identify the location.
* One could also use Integers to index the columns, if desired. This way
* we retain type information on columns; the data is never treated as a String
* (unless it is).
* <p/>
* User: jacob
* Date: 2012-Aug-30
*
* @see org.broad.igv.dev.db.SQLLineParserByLabel
* @see org.broad.igv.dev.StringArrayParser
*/
public interface IParser<TContainer, TIndex> {
byte getByte(TContainer obj, TIndex index) throws ParserException;
short getShort(TContainer obj, TIndex index) throws ParserException;
int getInt(TContainer obj, TIndex index) throws ParserException;
float getFloat(TContainer obj, TIndex index) throws ParserException;
double getDouble(TContainer obj, TIndex index) throws ParserException;
String getString(TContainer obj, TIndex index) throws ParserException;
/**
* Return the number of data objects contained.
* For an array, this would be the length
*
* @param obj
* @return
* @throws ParserException
*/
int size(TContainer obj) throws ParserException;
}