/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package org.broad.igv.renderer; import com.google.common.base.Predicate; import org.broad.igv.feature.Exon; import org.broad.igv.feature.IExon; import org.broad.igv.feature.IGVFeature; import org.broad.igv.track.RenderContext; import org.broad.igv.track.Track; import org.broad.igv.util.collections.CollUtils; import java.awt.*; import java.util.Collections; import java.util.List; import java.util.Set; /** * User: jacob * Date: 2013-Jan-28 */ public class SelectableFeatureRenderer extends IGVFeatureRenderer { private static final Stroke lineStroke; private static final Color selectedBorderColor; private Set<IExon> selectedExons = Collections.emptySet(); static{ lineStroke = new BasicStroke(2.0f); selectedBorderColor = Color.blue; } public SelectableFeatureRenderer(){ AA_COLOR_1 = new Color(AA_COLOR_1.getRed(), AA_COLOR_1.getGreen(), AA_COLOR_1.getBlue(), 120); AA_COLOR_2 = new Color(AA_COLOR_2.getRed(), AA_COLOR_2.getGreen(), AA_COLOR_2.getBlue(), 120); } @Override protected void drawExonRect(Graphics blockGraphics, Exon exon, int x, int y, int width, int height) { boolean isSelected = selectedExons.contains(exon); for(IExon selEx: selectedExons){ if(selEx.contains(exon.getStart()) || selEx.contains(exon.getEnd())){ isSelected = true; break; } } if(isSelected){ blockGraphics.clearRect(x, y, width, height); Graphics2D borderGraphics = (Graphics2D) blockGraphics.create(); borderGraphics.setColor(selectedBorderColor); borderGraphics.setStroke(lineStroke); borderGraphics.drawRect(x, y, width, height); }else{ super.drawExonRect(blockGraphics, exon, x, y, width, height); } } public void setSelectedExons(Set<IExon> selectedExons) { this.selectedExons = selectedExons; } }