/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* Created by JFormDesigner on Tue Nov 15 14:22:59 EST 2016
*/
package org.broad.igv.ui.util;
import org.broad.igv.ui.IGV;
import javax.swing.*;
import javax.swing.border.EmptyBorder;
import java.awt.*;
import java.awt.event.ActionEvent;
/**
* Before converting .shape, .map, .ct, .db, or .dp files (associated with individual RNAs)
* to IGV-loadable formats, allow the user to select the applicable chromosome,
* coordinate offset, and strand, since that information is not present in those files.
*
* @author sbusan
*/
public class ConvertFileDialog extends JDialog {
ConvertOptions opts = new ConvertOptions();
private ConvertFileDialog(Frame owner, String message, java.util.List<String> chromosomes) {
super(owner);
this.setModal(true);
initComponents();
label.setText("<html>" + message + "</html>");
okButton.setText("Continue");
// FIXME: limit input to empty string or integer
/*NumberFormat format = NumberFormat.getInstance();
NumberFormatter formatter = new NumberFormatter(format);
formatter.setValueClass(Integer.class);
formatter.setMinimum(0);
formatter.setMaximum(Integer.MAX_VALUE);
formatter.setAllowsInvalid(false);
DefaultFormatterFactory factory = new DefaultFormatterFactory(formatter);
startTextField.setFormatterFactory(factory);*/
DefaultComboBoxModel boxModel = new DefaultComboBoxModel();
for (String chrom : chromosomes){
boxModel.addElement(chrom);
}
chromBox.setModel(boxModel);
getRootPane().setDefaultButton(okButton);
}
public static ConvertOptions showConvertFileDialog(String message) {
ConvertFileDialog dlg = new ConvertFileDialog(IGV.getMainFrame(),
message,
IGV.getInstance().getGenomeManager().getCurrentGenome().getAllChromosomeNames());
dlg.setVisible(true);
dlg.opts.chrom = dlg.chromBox.getSelectedItem().toString();
dlg.opts.start = Integer.parseInt(dlg.startTextField.getText());
if (dlg.reverseRadio.isSelected()) dlg.opts.strand = "-";
return dlg.opts;
}
private void cancelButtonActionPerformed(ActionEvent e) {
opts.doConvert = false;
setVisible(false);
}
private void okButtonActionPerformed(ActionEvent e) {
opts.doConvert = true;
setVisible(false);
}
private void initComponents() {
// JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents
// Generated using JFormDesigner non-commercial license
dialogPane = new JPanel();
contentPanel = new JPanel();
label = new JLabel();
forwardRadio = new JRadioButton();
reverseRadio = new JRadioButton();
label1 = new JLabel();
label2 = new JLabel();
label3 = new JLabel();
startTextField = new JFormattedTextField();
chromBox = new JComboBox();
buttonBar = new JPanel();
cancelButton = new JButton();
okButton = new JButton();
//======== this ========
setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
setResizable(false);
Container contentPane = getContentPane();
contentPane.setLayout(new BorderLayout());
//======== dialogPane ========
{
dialogPane.setBorder(new EmptyBorder(12, 12, 12, 12));
dialogPane.setLayout(new BorderLayout());
//======== contentPanel ========
{
contentPanel.setLayout(null);
//---- label ----
label.setText("text");
label.setFont(label.getFont().deriveFont(label.getFont().getStyle() & ~Font.BOLD));
contentPanel.add(label);
label.setBounds(0, 0, 415, 140);
//---- forwardRadio ----
forwardRadio.setText("Forward");
forwardRadio.setSelected(true);
contentPanel.add(forwardRadio);
forwardRadio.setBounds(65, 180, forwardRadio.getPreferredSize().width, 23);
//---- reverseRadio ----
reverseRadio.setText("Reverse");
contentPanel.add(reverseRadio);
reverseRadio.setBounds(145, 180, reverseRadio.getPreferredSize().width, 23);
//---- label1 ----
label1.setText("Strand:");
label1.setHorizontalAlignment(SwingConstants.RIGHT);
contentPanel.add(label1);
label1.setBounds(5, 185, label1.getPreferredSize().width, 15);
//---- label2 ----
label2.setText("Chr:");
label2.setHorizontalAlignment(SwingConstants.RIGHT);
contentPanel.add(label2);
label2.setBounds(10, 155, 42, 15);
//---- label3 ----
label3.setText("Start:");
label3.setHorizontalAlignment(SwingConstants.RIGHT);
contentPanel.add(label3);
label3.setBounds(5, 215, 49, 15);
//---- startTextField ----
startTextField.setText("1");
contentPanel.add(startTextField);
startTextField.setBounds(65, 210, 165, startTextField.getPreferredSize().height);
//---- chromBox ----
chromBox.setMaximumRowCount(100);
contentPanel.add(chromBox);
chromBox.setBounds(65, 150, 165, chromBox.getPreferredSize().height);
{ // compute preferred size
Dimension preferredSize = new Dimension();
for(int i = 0; i < contentPanel.getComponentCount(); i++) {
Rectangle bounds = contentPanel.getComponent(i).getBounds();
preferredSize.width = Math.max(bounds.x + bounds.width, preferredSize.width);
preferredSize.height = Math.max(bounds.y + bounds.height, preferredSize.height);
}
Insets insets = contentPanel.getInsets();
preferredSize.width += insets.right;
preferredSize.height += insets.bottom;
contentPanel.setMinimumSize(preferredSize);
contentPanel.setPreferredSize(preferredSize);
}
}
dialogPane.add(contentPanel, BorderLayout.CENTER);
//======== buttonBar ========
{
buttonBar.setBorder(new EmptyBorder(12, 0, 0, 0));
buttonBar.setLayout(new GridBagLayout());
((GridBagLayout)buttonBar.getLayout()).columnWidths = new int[] {0, 0, 80};
((GridBagLayout)buttonBar.getLayout()).columnWeights = new double[] {1.0, 0.0, 0.0};
//---- cancelButton ----
cancelButton.setText("Cancel");
cancelButton.addActionListener(e -> cancelButtonActionPerformed(e));
buttonBar.add(cancelButton, new GridBagConstraints(1, 0, 1, 1, 0.0, 0.0,
GridBagConstraints.CENTER, GridBagConstraints.BOTH,
new Insets(0, 0, 5, 5), 0, 0));
//---- okButton ----
okButton.setText("OK");
okButton.addActionListener(e -> okButtonActionPerformed(e));
buttonBar.add(okButton, new GridBagConstraints(2, 0, 1, 1, 0.0, 0.0,
GridBagConstraints.CENTER, GridBagConstraints.BOTH,
new Insets(0, 0, 5, 0), 0, 0));
}
dialogPane.add(buttonBar, BorderLayout.SOUTH);
}
contentPane.add(dialogPane, BorderLayout.CENTER);
setSize(450, 355);
setLocationRelativeTo(getOwner());
//---- buttonGroup1 ----
ButtonGroup buttonGroup1 = new ButtonGroup();
buttonGroup1.add(forwardRadio);
buttonGroup1.add(reverseRadio);
// JFormDesigner - End of component initialization //GEN-END:initComponents
}
// JFormDesigner - Variables declaration - DO NOT MODIFY //GEN-BEGIN:variables
// Generated using JFormDesigner non-commercial license
private JPanel dialogPane;
private JPanel contentPanel;
private JLabel label;
private JRadioButton forwardRadio;
private JRadioButton reverseRadio;
private JLabel label1;
private JLabel label2;
private JLabel label3;
private JFormattedTextField startTextField;
private JComboBox chromBox;
private JPanel buttonBar;
private JButton cancelButton;
private JButton okButton;
// JFormDesigner - End of variables declaration //GEN-END:variables
}