/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
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* and open the template in the editor.
*/
package org.broad.igv.renderer;
import org.apache.log4j.Logger;
import org.broad.igv.feature.IGVFeature;
import htsjdk.tribble.Feature;
/**
* @author jrobinso
*/
public abstract class FeatureRenderer implements Renderer<IGVFeature> {
/**
* Return the pixel position corresponding to the chromosomal position.
*/
private static Logger log = Logger.getLogger(FeatureRenderer.class);
private Feature highlightFeature = null;
public Feature getHighlightFeature() {
return highlightFeature;
}
public void setHighlightFeature(Feature highlightFeature) {
this.highlightFeature = highlightFeature;
}
/**
* We render features 1 row at a time.
* This is called once before rendering the N rows
* Default implementation does nothing
*/
public void reset() {
//pass
}
}