/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ /* * Created by JFormDesigner on Mon Aug 06 15:33:57 EDT 2012 */ package org.broad.igv.cli_plugin.ui; import com.google.common.collect.Iterables; import com.google.common.collect.Lists; import org.broad.igv.cli_plugin.Argument; import org.broad.igv.sam.AlignmentTrack; import org.broad.igv.track.DataTrack; import org.broad.igv.track.FeatureTrack; import org.broad.igv.track.Track; import org.broad.igv.ui.IGV; import org.broad.igv.variant.VariantTrack; import javax.swing.*; import java.awt.*; import java.util.List; /** * @author Jacob Silterra */ public class TrackArgument extends ArgumentPanel { public TrackArgument(Argument argument) { initComponents(); super.initCommon(argument); if (argument != null) { List<Track> trackList = IGV.getInstance().getAllTracks(); Class clazz = getTrackClass(argument); Iterable<Track> tracks = Iterables.filter(trackList, clazz); List<Track> filteredTrackList = Lists.newArrayList(tracks); if(filteredTrackList.size() == 0){ throw new IllegalStateException("No tracks found of appropriate type; make sure data is loaded"); } trackComboBox.setModel(new DefaultComboBoxModel(filteredTrackList.toArray())); trackComboBox.setRenderer(new TrackComboBoxRenderer()); } } private void initComponents() { // JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents // Generated using JFormDesigner non-commercial license trackComboBox = new JComboBox(); //======== this ======== setLayout(new BoxLayout(this, BoxLayout.X_AXIS)); add(trackComboBox); // JFormDesigner - End of component initialization //GEN-END:initComponents } @Override public Track getValue() { return (Track) trackComboBox.getSelectedItem(); } // JFormDesigner - Variables declaration - DO NOT MODIFY //GEN-BEGIN:variables // Generated using JFormDesigner non-commercial license private JComboBox trackComboBox; // JFormDesigner - End of variables declaration //GEN-END:variables public static class TrackComboBoxRenderer extends DefaultListCellRenderer { @Override public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected, boolean cellHasFocus) { Track track = (Track) value; String toShow = "No Tracks Found"; if(track != null){ toShow = track.getName(); } return super.getListCellRendererComponent(list, toShow, index, isSelected, cellHasFocus); } } public Class getTrackClass(Argument argument) { switch (argument.getType()) { case VARIANT_TRACK: return VariantTrack.class; case FEATURE_TRACK: return FeatureTrack.class; case ALIGNMENT_TRACK: return AlignmentTrack.class; case DATA_TRACK: return DataTrack.class; default: throw new IllegalArgumentException("Argument does not specify a track type; specifies " + argument.getType()); } } }