/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* LocationPanel.java
*
* Created on September 11, 2007, 2:29 PM
*
* To change this template, choose Tools | Template Manager
* and open the template in the editor.
*/
package org.broad.igv.ui.panel;
//~--- non-JDK imports --------------------------------------------------------
import org.broad.igv.Globals;
import org.broad.igv.feature.Chromosome;
import org.broad.igv.feature.Cytoband;
import org.broad.igv.prefs.Constants;
import org.broad.igv.prefs.PreferencesManager;
import org.broad.igv.renderer.CytobandRenderer;
import org.broad.igv.ui.FontManager;
import org.broad.igv.ui.WaitCursorManager;
import org.broad.igv.event.IGVEventBus;
import org.broad.igv.event.ViewChange;
import javax.swing.*;
import javax.swing.event.MouseInputAdapter;
import java.awt.*;
import java.awt.event.MouseEvent;
import java.util.List;
/**
* @author jrobinso
*/
public class CytobandPanel extends JPanel {
private static int fontHeight = 10;
private static int bandHeight = 10;
private static String fontFamilyName = "Lucida Sans";
private boolean isDragging = false;
private double viewOrigin;
private double viewEnd;
double cytobandScale;
ReferenceFrame frame;
private Rectangle currentRegionRect;
private CytobandRenderer cytobandRenderer;
private List<Cytoband> currentCytobands;
public CytobandPanel(ReferenceFrame frame) {
this(frame, true);
}
public CytobandPanel(ReferenceFrame frame, boolean mouseable) {
this.frame = frame;
viewOrigin = frame.getOrigin();
viewEnd = frame.getEnd();
FontManager.getFont(fontHeight);
setFont(new Font(fontFamilyName, Font.BOLD, fontHeight));
if (mouseable) {
initMouseAdapter();
}
cytobandRenderer = (new CytobandRenderer());
}
@Override
protected void paintComponent(Graphics g) {
super.paintComponent(g);
if (PreferencesManager.getPreferences().getAsBoolean(Constants.ENABLE_ANTIALISING)) {
((Graphics2D) g).setRenderingHint(RenderingHints.KEY_TEXT_ANTIALIASING, RenderingHints.VALUE_TEXT_ANTIALIAS_ON);
}
if (frame.getChrName().equals(Globals.CHR_ALL) || getWidth() < 10) {
return;
}
int dataPanelWidth = frame.getWidthInPixels();
Rectangle cytoRect = new Rectangle(0, 10, dataPanelWidth, bandHeight);
Chromosome chromosome = getReferenceFrame().getChromosome();
if (chromosome == null) {
return;
}
currentCytobands = chromosome.getCytobands();
if (currentCytobands == null) {
return;
}
cytobandRenderer.draw(currentCytobands, g, cytoRect, frame);
int chromosomeLength = getReferenceFrame().getMaxCoordinate();
cytobandScale = ((double) chromosomeLength) / dataPanelWidth;
// The test is true if we are zoomed in
if (getReferenceFrame().getZoom() > 0) {
double origin = isDragging ? viewOrigin : getReferenceFrame().getOrigin();
double end = isDragging ? viewEnd : getReferenceFrame().getEnd();
int pixelStart = (int) (origin / cytobandScale);
int pixelEnd = (int) (end / cytobandScale);
int pixelSpan = Math.max(0, pixelEnd - pixelStart);
// Draw Cytoband current region viewer
int height = (int) cytoRect.getHeight();
g.setColor(Color.RED);
int y = (int) (cytoRect.getY()) + CytobandRenderer.CYTOBAND_Y_OFFSET;
currentRegionRect = new Rectangle(pixelStart - 2, y, pixelSpan + 4, height);
g.drawRect(pixelStart, y, pixelSpan, height);
g.drawRect(pixelStart - 1, (y - 1), pixelSpan + 2, height + 2);
g.drawRect(pixelStart - 2, (y - 2), pixelSpan + 4, height + 4);
if (pixelSpan < 2) {
g.drawRect(pixelStart - 2, (y - 2), pixelSpan + 4, height + 4);
}
}
}
private void initMouseAdapter() {
setCursor(Cursor.getPredefinedCursor(Cursor.HAND_CURSOR));
this.setToolTipText(
"<html>Click anywhere on the chromosome<br/>to center view at that location.");
MouseInputAdapter mouseAdapter = new MouseInputAdapter() {
int lastMousePressX;
public void mouseClicked(MouseEvent e) {
if (currentCytobands == null) return;
final int mouseX = e.getX();
final int clickCount = e.getClickCount();
WaitCursorManager.CursorToken token = WaitCursorManager.showWaitCursor();
try {
double newLocation = cytobandScale * mouseX;
if (clickCount > 1) {
final int newZoom = getReferenceFrame().getZoom() + 1;
getReferenceFrame().doSetZoomCenter(newZoom, newLocation);
} else {
getReferenceFrame().centerOnLocation(newLocation);
}
ViewChange result = ViewChange.Result();
result.setRecordHistory(true);
IGVEventBus.getInstance().post(result);
} finally {
WaitCursorManager.removeWaitCursor(token);
}
}
@Override
public void mousePressed(MouseEvent e) {
lastMousePressX = e.getX();
}
@Override
public void mouseReleased(MouseEvent e) {
if (currentCytobands == null) return;
if (isDragging) {
WaitCursorManager.CursorToken token = WaitCursorManager.showWaitCursor();
try {
getReferenceFrame().setOrigin(viewOrigin);
getReferenceFrame().recordHistory();
} finally {
WaitCursorManager.removeWaitCursor(token);
}
}
isDragging = false;
}
@Override
public void mouseDragged(MouseEvent e) {
if (currentCytobands == null) return;
if (!isDragging && (currentRegionRect != null && currentRegionRect.contains(e.getPoint()))) {
isDragging = true;
viewOrigin = getReferenceFrame().getOrigin();
}
int w = getWidth();
double scale = getReferenceFrame().getScale();
int x = (int) Math.max(0, Math.min(e.getX(), w * (cytobandScale - scale)));
int delta = x - lastMousePressX;
if ((delta != 0) && (cytobandScale > 0)) {
viewOrigin = Math.max(0, Math.min(viewOrigin + delta * cytobandScale, w * (cytobandScale - scale)));
repaint();
}
lastMousePressX = x;
}
@Override
public void mouseEntered(MouseEvent e) {
}
@Override
public void mouseExited(MouseEvent e) {
}
};
addMouseMotionListener(mouseAdapter);
addMouseListener(mouseAdapter);
}
private ReferenceFrame getReferenceFrame() {
return frame;
}
}