/* * The MIT License (MIT) * * Copyright (c) 2007-2015 Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ /* * To change this template, choose Tools | Templates * and open the template in the editor. */ package org.broad.igv.data; import org.junit.AfterClass; import org.junit.BeforeClass; import org.junit.Test; import static org.broad.igv.util.TestUtils.DATA_DIR; import static org.junit.Assert.assertTrue; /** * @author jrobinso */ public class DataUtilsTest { public DataUtilsTest() { } @BeforeClass public static void setUpClass() throws Exception { } @AfterClass public static void tearDownClass() throws Exception { } /** * Test of estimateFileMetrics method, of class DataUtils. */ @Test public void estimateRowCount() { String filename = DATA_DIR + "/cn/HindForGISTIC.hg16.cn"; int actualRowCount = 56961; // looking for estimate within 20$ int estRowCount = DataUtils.estimateFileMetrics(filename).getEstRowCount(); assertTrue(estRowCount > (int) (0.8 * actualRowCount) && estRowCount < (int) (1.2 * actualRowCount)); } @Test public void estimateProcessingTime() { String filename = DATA_DIR + "/cn/HindForGISTIC.hg16.cn"; DataUtils.AsciiFileMetrics metrics = DataUtils.estimateFileMetrics(filename); System.out.println(DataUtils.estimatePreprocessingTime(metrics)); } }