/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.data;
import org.junit.AfterClass;
import org.junit.BeforeClass;
import org.junit.Test;
import static org.broad.igv.util.TestUtils.DATA_DIR;
import static org.junit.Assert.assertTrue;
/**
* @author jrobinso
*/
public class DataUtilsTest {
public DataUtilsTest() {
}
@BeforeClass
public static void setUpClass() throws Exception {
}
@AfterClass
public static void tearDownClass() throws Exception {
}
/**
* Test of estimateFileMetrics method, of class DataUtils.
*/
@Test
public void estimateRowCount() {
String filename = DATA_DIR + "/cn/HindForGISTIC.hg16.cn";
int actualRowCount = 56961;
// looking for estimate within 20$
int estRowCount = DataUtils.estimateFileMetrics(filename).getEstRowCount();
assertTrue(estRowCount > (int) (0.8 * actualRowCount) &&
estRowCount < (int) (1.2 * actualRowCount));
}
@Test
public void estimateProcessingTime() {
String filename = DATA_DIR + "/cn/HindForGISTIC.hg16.cn";
DataUtils.AsciiFileMetrics metrics = DataUtils.estimateFileMetrics(filename);
System.out.println(DataUtils.estimatePreprocessingTime(metrics));
}
}