/*
* The MIT License (MIT)
*
* Copyright (c) 2007-2015 Broad Institute
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
/*
* Created by JFormDesigner on Mon Dec 13 14:39:17 EST 2010
*/
package org.broad.igv.lists;
import javax.swing.plaf.*;
import org.apache.log4j.Logger;
import org.broad.igv.DirectoryManager;
import org.broad.igv.cbio.FilterGeneNetworkUI;
import org.broad.igv.gitools.Gitools;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.util.FileDialogUtils;
import org.broad.igv.ui.util.MessageUtils;
import javax.swing.*;
import javax.swing.border.BevelBorder;
import javax.swing.border.EmptyBorder;
import javax.swing.border.EtchedBorder;
import javax.swing.border.LineBorder;
import javax.swing.event.ListSelectionEvent;
import javax.swing.event.ListSelectionListener;
import java.awt.*;
import java.awt.event.*;
import java.io.File;
import java.io.IOException;
import java.util.*;
import java.util.List;
/**
* @author Jim RObinson
* <p/>
* public String getToolTipText(MouseEvent evt) {
* // Get item index
* int index = locationToIndex(evt.getPoint());
* // Get item Object i
* tem = getModel().getElementAt(index);
* // Return the tool tip text
* return "tool tip for "+item; }
*/
public class GeneListManagerUI extends JDialog {
private static Logger log = Logger.getLogger(GeneListManagerUI.class);
private static String ALL = "All";
private static String DEFAULT_ACTION_TEXT = "View";
private static final GeneListListener DEFAULT_ACTION_LISTENER = new GeneListListener() {
@Override
public void actionPerformed(JDialog dialog, GeneList geneList) {
IGV.getInstance().setGeneList(geneList);
dialog.setVisible(false);
dialog.dispose();
}
};
// This is a static so its "remembered" withing the context of a session.
static String lastSelectedGroup;
String selectedGroup;
ListListModel listModel;
GeneListModel geneListModel;
/**
* Map of gene list name -> gene list
*/
Map<String, GeneList> geneLists;
private String selectedList;
GeneListManager manager;
private static GeneListManagerUI instance;
private GeneListListener listener;
/**
* Get or create new GeneListManagerUI.
* If old instance retrieved, the owner IS NOT changed
*
* @param owner
* @return
*/
public static GeneListManagerUI getInstance(Frame owner) {
return getInstance(owner, DEFAULT_ACTION_TEXT, DEFAULT_ACTION_LISTENER);
}
/**
* @param owner
* @param actionText Text to be displayed when the action is performed. Default is "View", for simply viewing the gene list
* @param listener The action performed with the specified GeneList
* @return
*/
public static GeneListManagerUI getInstance(Frame owner, String actionText, GeneListListener listener) {
if (instance == null) {
instance = new GeneListManagerUI(owner);
}
instance.setTitle(actionText);
instance.actionButton.setText(actionText);
instance.listener = listener;
if (listener != DEFAULT_ACTION_LISTENER) {
instance.viewNetworkButton.setVisible(false);
}
return instance;
}
private GeneListManagerUI(Frame owner) {
super(owner);
manager = GeneListManager.getInstance();
initComponents();
initLists();
// boolean showTDMButton = Boolean.parseBoolean(System.getProperty("enableGitools", "false"));
// exportTDMButton.setVisible(showTDMButton);
}
private void initLists() {
geneLists = manager.getGeneLists();
groupJList.setModel(new AbstractListModel() {
ArrayList<String> groups = new ArrayList();
{
groups.add(ALL);
groups.addAll(manager.getGroups());
}
public int getSize() {
return groups.size();
}
public Object getElementAt(int i) {
return groups.get(i);
}
});
listModel = new ListListModel();
glJList.setModel(listModel);
geneListModel = new GeneListModel();
lociJList.setModel(geneListModel);
if (lastSelectedGroup != null) {
groupJList.setSelectedValue(lastSelectedGroup, true);
} else {
groupJList.setSelectedIndex(0);
}
glJList.setSelectedIndex(0);
}
private void groupsValueChanged(ListSelectionEvent e) {
selectedGroup = (String) groupJList.getSelectedValue();
lastSelectedGroup = selectedGroup;
deleteGroupButton.setEnabled(!(GeneListManager.USER_GROUP.equals(selectedGroup) ||
!GeneListManager.DEFAULT_GENE_LISTS.contains(selectedGroup)));
updateListModel();
}
private void listsValueChanged(ListSelectionEvent e) {
selectedList = (String) glJList.getSelectedValue();
if (selectedList == null) {
geneListModel.clear();
} else {
actionButton.setEnabled(true);
GeneList gl = listModel.getGeneList(selectedList);
geneListModel.setGeneList(gl);
lociJList.setModel(geneListModel);
lociJList.updateUI();
editButton.setEnabled(gl.isEditable());
//deleteButton.setEnabled(gl.isEditable());
}
}
private void listLabelMouseClicked(MouseEvent e) {
listModel.sort();
glJList.updateUI();
}
private void searchBoxKeyReleased(KeyEvent e) {
updateListModel();
}
private void updateListModel() {
listModel.filter();
glJList.clearSelection();
glJList.updateUI();
lociJList.updateUI();
}
/**
* Stub method generated by JFormDesigner t0 place custom code
*/
private void createUIComponents() {
glJList = new JList() {
public String getToolTipText(MouseEvent evt) {
int index = locationToIndex(evt.getPoint());
if (index >= 0) {
Object item = getModel().getElementAt(index);
GeneList gl = geneLists.get(item);
return gl.getDescription();
}
return null;
}
};
}
private void editButtonActionPerformed(ActionEvent e) {
String selection = (String) glJList.getSelectedValue();
if (selection != null) {
GeneList geneList = geneLists.get(selection);
GeneListEditDialog dlg = new GeneListEditDialog(this, geneList);
dlg.setVisible(true);
if (!dlg.isCanceled()) {
geneListModel.setGeneList(geneList);
listModel.filter();
glJList.updateUI();
lociJList.updateUI();
}
}
}
private void newListActionPerformed(ActionEvent e) {
GeneList geneList = new GeneList();
GeneListEditDialog dlg = new GeneListEditDialog(this, geneList);
dlg.setVisible(true);
if (!dlg.isCanceled()) {
geneList.setGroup(manager.USER_GROUP);
manager.addGeneList(geneList);
listModel.add(geneList);
glJList.updateUI();
glJList.setSelectedValue(geneList.getName(), true);
groupJList.updateUI();
//loci.updateUI();
}
}
private void copyListButtonActionPerformed(ActionEvent e) {
String selection = (String) glJList.getSelectedValue();
if (selection != null) {
GeneList geneList = geneLists.get(selection);
GeneList copiedList = geneList.copy();
GeneListEditDialog dlg = new GeneListEditDialog(this, copiedList);
dlg.setVisible(true);
if (!dlg.isCanceled()) {
listModel.add(copiedList);
glJList.updateUI();
glJList.setSelectedValue(copiedList.getName(), true);
//loci.updateUI();
}
}
}
private void deleteButtonActionPerformed(ActionEvent e) {
String selection = (String) glJList.getSelectedValue();
if (selection != null) {
if (MessageUtils.confirm("<html>Are you sure you want to delete list '" + selection + "' ?" +
"<br>associated lists? <b>This action cannot be undone")) {
boolean groupRemoved = manager.deleteList(selection);
if (groupRemoved) {
initLists();
} else {
geneLists.remove(selection);
listModel.filter();
glJList.updateUI();
glJList.setSelectedIndex(0);
lociJList.updateUI();
}
}
}
}
/**
* Import a gene list group from a GMT file
*
* @param e
*/
private void importButtonActionPerformed(ActionEvent e) {
File gmtFile = FileDialogUtils.chooseFile("Import GMT File");
if (gmtFile != null) {
try {
List<GeneList> loadedLists = manager.importFile(gmtFile);
initLists();
if (loadedLists.size() > 0) {
groupJList.setSelectedValue(loadedLists.get(0).getGroup(), true);
glJList.setSelectedValue(loadedLists.get(0).getName(), true);
groupJList.updateUI();
glJList.updateUI();
}
} catch (IOException e1) {
log.error("Error updating genome property file", e1);
MessageUtils.showMessage("Error importing .gmt file: " + e1.getMessage());
}
}
}
/**
* Export the selected group to a GMT file
*
* @param e
*/
private void exportButtonActionPerformed(ActionEvent e) {
if (selectedGroup != null) {
File userDir = DirectoryManager.getUserDirectory();
File initFile = new File(selectedGroup + ".gmt");
File glFile = FileDialogUtils.chooseFile("Save gene lists", userDir, initFile, FileDialogUtils.SAVE);
if (glFile != null) {
try {
manager.exportGMT(selectedGroup, glFile);
} catch (Exception e1) {
log.error("Error exporting gene lists", e1);
MessageUtils.showMessage("Error exporting gene lists: " + e1.getMessage());
}
}
}
}
private void deleteGroupButtonActionPerformed(ActionEvent e) {
if (selectedGroup != null && MessageUtils.confirm(this, "<html>Are you sure you want to delete group '" +
selectedGroup + "' and all " +
"<br>associated lists? <b>This action cannot be undone")) {
manager.deleteGroup(selectedGroup);
initLists();
}
}
private void closeButtonActionPerformed(ActionEvent e) {
setVisible(false);
}
private void actionButtonActionPerformed(ActionEvent e) {
if (selectedList != null) {
GeneList geneList = geneLists.get(selectedList);
listener.actionPerformed(this, geneList);
}
}
private void glJListMouseClicked(MouseEvent e) {
if (e.getClickCount() > 1) {
this.actionButtonActionPerformed(null);
}
}
private void retrieveNetworkButtonActionPerformed(ActionEvent e) {
if (selectedList != null) {
GeneList geneList = geneLists.get(selectedList);
FilterGeneNetworkUI fgnUI = new FilterGeneNetworkUI(IGV.getMainFrame(), geneList);
fgnUI.setVisible(true);
}
}
private void exportTDMButtonActionPerformed_deleteme(ActionEvent e) {
if (selectedList != null) {
GeneList geneList = geneLists.get(selectedList);
File file = FileDialogUtils.chooseFile("Export TDM file", null, FileDialogUtils.SAVE);
if (file != null) {
try {
Gitools.exportTDM(geneList.getLoci(), file);
} catch (IOException exc) {
log.error("Error exporting TDM data", exc);
MessageUtils.showErrorMessage("Error exporting TDM data", exc);
}
}
}
}
class ListListModel extends AbstractListModel {
boolean sortAscending;
ArrayList<String> filteredNames;
ListListModel() {
filteredNames = new ArrayList(geneLists.size());
filter();
}
public int getSize() {
return filteredNames.size();
}
public Object getElementAt(int i) {
return filteredNames.get(i);
}
void sort() {
Collections.sort(filteredNames, new Comparator<String>() {
public int compare(String s, String s1) {
return sortAscending ? s.compareTo(s1) : s1.compareTo(s);
}
});
sortAscending = !sortAscending;
}
GeneList getGeneList(String listName) {
return geneLists.get(listName);
}
void filter() {
filteredNames.clear();
for (Map.Entry<String, GeneList> entry : geneLists.entrySet()) {
String name = entry.getKey();
GeneList gl = entry.getValue();
if (gl != null) {
if (gl != null && isPassFilter(gl)) {
filteredNames.add(name);
}
}
}
}
boolean isPassFilter(GeneList geneList) {
if (selectedGroup != null && !selectedGroup.equals(ALL)) {
if (!geneList.getGroup().equals(selectedGroup)) {
return false;
}
}
String filterString = searchBox.getText();
if (filterString != null && filterString.trim().length() > 0) {
String tmp = filterString.trim().toLowerCase();
if (geneList.getName().toLowerCase().contains(tmp)) {
return true;
}
for (String gene : geneList.getLoci()) {
if (gene.toLowerCase().contains(tmp)) {
return true;
}
}
return false;
}
return true;
}
public void add(GeneList geneList) {
geneLists.put(geneList.getName(), geneList);
if (isPassFilter(geneList)) {
filteredNames.add(geneList.getName());
}
}
}
class GeneListModel extends AbstractListModel {
java.util.List<String> genes;
GeneListModel() {
genes = new ArrayList();
}
void setGeneList(GeneList geneList) {
genes = geneList == null ? new ArrayList() : new ArrayList(geneList.getLoci());
}
public int getSize() {
return genes.size();
}
public Object getElementAt(int i) {
return genes.get(i);
}
public void clear() {
genes.clear();
}
}
private void initComponents() {
// JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents
// Generated using JFormDesigner non-commercial license
createUIComponents();
dialogPane = new JPanel();
contentPanel = new JPanel();
panel2 = new JPanel();
panel1 = new JPanel();
panel6 = new JPanel();
label1 = new JLabel();
searchBox = new JTextField();
panel10 = new JPanel();
splitPane2 = new JSplitPane();
splitPane1 = new JSplitPane();
panel3 = new JPanel();
label3 = new JLabel();
scrollPane1 = new JScrollPane();
groupJList = new JList();
panel7 = new JPanel();
importButton = new JButton();
exportButton = new JButton();
deleteGroupButton = new JButton();
panel4 = new JPanel();
listLabel = new JLabel();
scrollPane2 = new JScrollPane();
panel8 = new JPanel();
newList = new JButton();
copyListButton = new JButton();
editButton = new JButton();
deleteButton = new JButton();
panel5 = new JPanel();
label4 = new JLabel();
scrollPane3 = new JScrollPane();
lociJList = new JList();
panel9 = new JPanel();
buttonBar = new JPanel();
exportTDMButton = new JButton();
viewNetworkButton = new JButton();
actionButton = new JButton();
closeButton = new JButton();
//======== this ========
setDefaultCloseOperation(WindowConstants.DISPOSE_ON_CLOSE);
Container contentPane = getContentPane();
contentPane.setLayout(new BorderLayout());
//======== dialogPane ========
{
dialogPane.setBorder(new EmptyBorder(12, 12, 12, 12));
dialogPane.setLayout(new BorderLayout());
//======== contentPanel ========
{
contentPanel.setBorder(new EtchedBorder(EtchedBorder.RAISED));
contentPanel.setLayout(new BorderLayout());
//======== panel2 ========
{
panel2.setBackground(new Color(204, 204, 204));
panel2.setLayout(new BoxLayout(panel2, BoxLayout.X_AXIS));
//======== panel1 ========
{
panel1.setBorder(new EmptyBorder(5, 5, 5, 0));
panel1.setBackground(new Color(204, 204, 204));
panel1.setLayout(new BoxLayout(panel1, BoxLayout.X_AXIS));
//======== panel6 ========
{
panel6.setMinimumSize(new Dimension(0, 0));
panel6.setPreferredSize(new Dimension(400, 0));
panel6.setOpaque(false);
panel6.setLayout(null);
}
panel1.add(panel6);
//---- label1 ----
label1.setText("Search");
label1.setBorder(new EmptyBorder(0, 0, 0, 10));
panel1.add(label1);
//---- searchBox ----
searchBox.setBorder(new BevelBorder(BevelBorder.LOWERED));
searchBox.addKeyListener(new KeyAdapter() {
@Override
public void keyReleased(KeyEvent e) {
searchBoxKeyReleased(e);
}
});
panel1.add(searchBox);
//======== panel10 ========
{
panel10.setPreferredSize(new Dimension(5, 0));
panel10.setMinimumSize(new Dimension(5, 0));
panel10.setOpaque(false);
panel10.setLayout(null);
}
panel1.add(panel10);
}
panel2.add(panel1);
}
contentPanel.add(panel2, BorderLayout.NORTH);
//======== splitPane2 ========
{
splitPane2.setBorder(null);
splitPane2.setDividerLocation(600);
//======== splitPane1 ========
{
splitPane1.setBorder(null);
splitPane1.setDividerLocation(270);
//======== panel3 ========
{
panel3.setBorder(LineBorder.createBlackLineBorder());
panel3.setLayout(new BorderLayout());
//---- label3 ----
label3.setText("Group");
panel3.add(label3, BorderLayout.NORTH);
//======== scrollPane1 ========
{
scrollPane1.setPreferredSize(new Dimension(80, 140));
//---- groupJList ----
groupJList.setModel(new AbstractListModel() {
String[] values = {
"All"
};
@Override
public int getSize() { return values.length; }
@Override
public Object getElementAt(int i) { return values[i]; }
});
groupJList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
groupJList.addListSelectionListener(new ListSelectionListener() {
@Override
public void valueChanged(ListSelectionEvent e) {
groupsValueChanged(e);
}
});
scrollPane1.setViewportView(groupJList);
}
panel3.add(scrollPane1, BorderLayout.CENTER);
//======== panel7 ========
{
panel7.setLayout(new BoxLayout(panel7, BoxLayout.X_AXIS));
//---- importButton ----
importButton.setIcon(null);
importButton.setText("Import");
importButton.setToolTipText("Import a .gmt file, .grp, or .bed file");
importButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
importButtonActionPerformed(e);
}
});
panel7.add(importButton);
//---- exportButton ----
exportButton.setText("Export");
exportButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
exportButtonActionPerformed(e);
}
});
panel7.add(exportButton);
//---- deleteGroupButton ----
deleteGroupButton.setText("Delete");
deleteGroupButton.setEnabled(false);
deleteGroupButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
deleteGroupButtonActionPerformed(e);
}
});
panel7.add(deleteGroupButton);
}
panel3.add(panel7, BorderLayout.SOUTH);
}
splitPane1.setLeftComponent(panel3);
//======== panel4 ========
{
panel4.setBorder(LineBorder.createBlackLineBorder());
panel4.setLayout(new BorderLayout());
//---- listLabel ----
listLabel.setText("List");
listLabel.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
listLabelMouseClicked(e);
}
});
panel4.add(listLabel, BorderLayout.PAGE_START);
//======== scrollPane2 ========
{
//---- glJList ----
glJList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
glJList.addListSelectionListener(new ListSelectionListener() {
@Override
public void valueChanged(ListSelectionEvent e) {
listsValueChanged(e);
}
});
glJList.addMouseListener(new MouseAdapter() {
@Override
public void mouseClicked(MouseEvent e) {
glJListMouseClicked(e);
}
});
scrollPane2.setViewportView(glJList);
}
panel4.add(scrollPane2, BorderLayout.CENTER);
//======== panel8 ========
{
panel8.setLayout(new BoxLayout(panel8, BoxLayout.X_AXIS));
//---- newList ----
newList.setIcon(null);
newList.setText("New");
newList.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
newListActionPerformed(e);
}
});
panel8.add(newList);
//---- copyListButton ----
copyListButton.setText("Copy");
copyListButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
copyListButtonActionPerformed(e);
}
});
panel8.add(copyListButton);
//---- editButton ----
editButton.setText("Edit");
editButton.setEnabled(false);
editButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
editButtonActionPerformed(e);
}
});
panel8.add(editButton);
//---- deleteButton ----
deleteButton.setIcon(null);
deleteButton.setText("Delete");
deleteButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
deleteButtonActionPerformed(e);
}
});
panel8.add(deleteButton);
}
panel4.add(panel8, BorderLayout.PAGE_END);
}
splitPane1.setRightComponent(panel4);
}
splitPane2.setLeftComponent(splitPane1);
//======== panel5 ========
{
panel5.setBorder(LineBorder.createBlackLineBorder());
panel5.setLayout(new BorderLayout());
//---- label4 ----
label4.setText("Loci");
panel5.add(label4, BorderLayout.NORTH);
//======== scrollPane3 ========
{
//---- lociJList ----
lociJList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
lociJList.setSelectionBackground(Color.white);
lociJList.setSelectionForeground(Color.black);
lociJList.setFocusable(false);
scrollPane3.setViewportView(lociJList);
}
panel5.add(scrollPane3, BorderLayout.CENTER);
//======== panel9 ========
{
panel9.setLayout(new BoxLayout(panel9, BoxLayout.X_AXIS));
}
panel5.add(panel9, BorderLayout.SOUTH);
}
splitPane2.setRightComponent(panel5);
}
contentPanel.add(splitPane2, BorderLayout.CENTER);
}
dialogPane.add(contentPanel, BorderLayout.CENTER);
//======== buttonBar ========
{
buttonBar.setBorder(null);
buttonBar.setLayout(new FlowLayout(FlowLayout.RIGHT));
//---- exportTDMButton ----
exportTDMButton.setText("Export TDM");
exportTDMButton.setVisible(false);
exportTDMButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
exportTDMButtonActionPerformed_deleteme(e);
}
});
buttonBar.add(exportTDMButton);
//---- viewNetworkButton ----
viewNetworkButton.setText("Retrieve Network");
viewNetworkButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
retrieveNetworkButtonActionPerformed(e);
}
});
buttonBar.add(viewNetworkButton);
//---- actionButton ----
actionButton.setText("View");
actionButton.setEnabled(false);
actionButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
actionButtonActionPerformed(e);
}
});
buttonBar.add(actionButton);
//---- closeButton ----
closeButton.setText("Close");
closeButton.addActionListener(new ActionListener() {
@Override
public void actionPerformed(ActionEvent e) {
closeButtonActionPerformed(e);
}
});
buttonBar.add(closeButton);
}
dialogPane.add(buttonBar, BorderLayout.SOUTH);
}
contentPane.add(dialogPane, BorderLayout.CENTER);
setSize(845, 580);
setLocationRelativeTo(getOwner());
// JFormDesigner - End of component initialization //GEN-END:initComponents
}
// JFormDesigner - Variables declaration - DO NOT MODIFY //GEN-BEGIN:variables
// Generated using JFormDesigner non-commercial license
private JPanel dialogPane;
private JPanel contentPanel;
private JPanel panel2;
private JPanel panel1;
private JPanel panel6;
private JLabel label1;
private JTextField searchBox;
private JPanel panel10;
private JSplitPane splitPane2;
private JSplitPane splitPane1;
private JPanel panel3;
private JLabel label3;
private JScrollPane scrollPane1;
private JList groupJList;
private JPanel panel7;
private JButton importButton;
private JButton exportButton;
private JButton deleteGroupButton;
private JPanel panel4;
private JLabel listLabel;
private JScrollPane scrollPane2;
private JList glJList;
private JPanel panel8;
private JButton newList;
private JButton copyListButton;
private JButton editButton;
private JButton deleteButton;
private JPanel panel5;
private JLabel label4;
private JScrollPane scrollPane3;
private JList lociJList;
private JPanel panel9;
private JPanel buttonBar;
private JButton exportTDMButton;
private JButton viewNetworkButton;
private JButton actionButton;
private JButton closeButton;
// JFormDesigner - End of variables declaration //GEN-END:variables
/**
* Custom action listener for receiving a GeneList
* and taking some action based on that. Listeners
* implementing this interface can be used as callbacks
* once a GeneList is selected from GeneListManagerUI
*
* @author jacob
* @date 2013-Jan-04
* @api
*/
public interface GeneListListener {
void actionPerformed(JDialog dialog, GeneList geneList);
}
}