TIFFWriter.java

package dr.util;

/**
 * @author Marc A. Suchard
 * @author Liya Thomas -- most code taken from Liya's November 2001 free source code
 */


import java.io.DataOutputStream;

public class TIFFWriter {

	public static final short MAXROWS = 6000;    // maximum # of rows
	public static final short MAXCOLUMNS = 3000; // maximum # of columns

	// Create TIFF image of integer array
	public static void writeDoubleArray(
			DataOutputStream dataOut,
			double[][] inputImageInt) {

		final int rows = inputImageInt.length;
		final int columns = inputImageInt[0].length;

		if (rows < 0 || rows > MAXROWS || columns < 0 || columns > MAXCOLUMNS)
			throw new RuntimeException("Invalid # rows and # columns");

		// offset to the end of data (gray values) in file
		int pos = 8 + rows * columns;

		try {

			/*
			 *  Write the header
			 */
			short i, j;
			i = (short) 'I';
			j = (short) (i * 256 + i);
			fputword(dataOut, j);
			fputword(dataOut, (short) 42);
			fputlong(dataOut, pos);

			/*
			 * Write the bitmap
			 */
			for (i = 0; i < rows; i++)
				for (j = 0; j < columns; j++) {
					int datum = (int) inputImageInt[i][j];
					dataOut.writeByte((byte) datum);
				}

			/*
			 * Write the tags
			 */

			fputword(dataOut, (short) 8);										// # of tags
			writetiftag(dataOut, SubFileType, TIFFshort, 1, 1);
			writetiftag(dataOut, ImageWidth, TIFFshort, 1, columns);
			writetiftag(dataOut, ImageLength, TIFFshort, 1, rows);
			writetiftag(dataOut, BitsPerSample, TIFFshort, 1, 8);
			writetiftag(dataOut, Compression, TIFFshort, 1, 1);
			writetiftag(dataOut, PhotoMetricInterp, TIFFshort, 1, 1);		  // for gray values only
			writetiftag(dataOut, StripOffsets, TIFFlong, 1, 8);				// beginning of image data
			writetiftag(dataOut, PlanarConfiguration, TIFFshort, 1, 1);

			fputlong(dataOut, 0);

		} catch (java.io.IOException read) {
			System.out.println("Error occured while writing output file.");
		}

	}

	/*
	 * write one TIFF tag to the IFD
	 */
	static void writetiftag(DataOutputStream dataOut, short tag, short type, int length, int offset) {
		fputword(dataOut, tag);
		fputword(dataOut, type);
		fputlong(dataOut, length);
		fputlong(dataOut, offset);
	} /* writetiftag */

	/*
	 * function: fputword
	 */
	static void fputword(DataOutputStream dataOut, short n) {
		try {
			dataOut.writeByte((byte) n);
			dataOut.writeByte((byte) (n >> 8));
		} catch (java.io.IOException read) {
			System.out.println("Error occured while writing output file.");
		}

	} /* fputword */

	/*
	 * function: fputlong
	 */
	static void fputlong(DataOutputStream dataOut, int n) {
		try {
			dataOut.writeByte((byte) n);
			dataOut.writeByte((byte) (n >> 8));
			dataOut.writeByte((byte) (n >> 16));
			dataOut.writeByte((byte) (n >> 24));
		} catch (java.io.IOException read) {
			System.out.println("Error occured while writing output file.");
		}

	} /* fputlong */


	public static final short GOOD_WRITE = 0;
	public static final short BAD_WRITE = 1;
	public static final short BAD_READ = 2;
	public static final short MEMORY_ERROR = 3;
	public static final short WRONG_BITS = 4;

	public static final short RGB_RED = 0;
	public static final short RGB_GREEN = 1;
	public static final short RGB_BLUE = 2;
	public static final short RGB_SIZE = 3;

	/*
	 * TIFF object sizes
	 */
	public static final short TIFFbyte = 1;
	public static final short TIFFascii = 2;
	public static final short TIFFshort = 3;
	public static final short TIFFlong = 4;
	public static final short TIFFrational = 5;

	/*
	 * TIFF tag names
	 */
	public static final short NewSubFile = 254;
	public static final short SubFileType = 255;
	public static final short ImageWidth = 256;
	public static final short ImageLength = 257;
	public static final short RowsPerStrip = 278;
	public static final short StripOffsets = 273;
	public static final short StripByteCounts = 279;
	public static final short SamplesPerPixel = 277;
	public static final short BitsPerSample = 258;
	public static final short Compression = 259;
	public static final short PlanarConfiguration = 284;
	public static final short Group3Options = 292;
	public static final short Group4Options = 293;
	public static final short FillOrder = 266;
	public static final short Threshholding = 263;
	public static final short CellWidth = 264;
	public static final short CellLength = 265;
	public static final short MinSampleValue = 280;
	public static final short MaxSampleValue = 281;
	public static final short PhotoMetricInterp = 262;
	public static final short GrayResponseUnit = 290;
	public static final short GrayResponseCurve = 291;
	public static final short ColorResponseUnit = 300;
	public static final short ColorResponseCurves = 301;
	public static final short XResolution = 282;
	public static final short YResolution = 283;
	public static final short ResolutionUnit = 296;
	public static final short Orientation = 274;
	public static final short DocumentName = 269;
	public static final short PageName = 285;
	public static final short XPosition = 286;
	public static final short YPosition = 287;
	public static final short PageNumber = 297;
	public static final short ImageDescription = 270;
	public static final short Make = 271;
	public static final short Model = 272;
	public static final short FreeOffsets = 288;
	public static final short FreeByteCounts = 289;
	public static final short ColorMap = 320;
	public static final short Artist = 315;
	public static final short DateTime = 306;
	public static final short HostComputer = 316;
	public static final short Software = 305;

}