/** * */ package dr.inference.operators; /** * @author Sebastian Hoehna * */ public abstract class SimpleOperator implements MCMCOperator { /** * */ public SimpleOperator() { // TODO Auto-generated constructor stub } public abstract String getOperatorName(); /** * @return the weight of this operator. */ public final double getWeight() { return weight; } /** * Sets the weight of this operator. */ public final void setWeight(double w) { if (w > 0) { weight = w; } else throw new IllegalArgumentException("Weight must be a positive real. (called with " + w + ")"); } public final int getStartIter() { return startIter; } public final void setStartIter( int i) { startIter = i; } public void accept(double deviation) { lastDeviation = deviation; if (!operateAllowed) { operateAllowed = true; accepted += 1; sumDeviation += deviation; } else throw new RuntimeException("Accept/reject methods called twice without operate called in between!"); } public void reject() { if (!operateAllowed) { operateAllowed = true; rejected += 1; } else throw new RuntimeException("Accept/reject methods called twice without operate called in between!"); } public final void reset() { operateAllowed = true; accepted = 0; rejected = 0; lastDeviation = 0.0; sumDeviation = 0.0; } public final int getCount() { return accepted + rejected; } public final int getAcceptCount() { return accepted; } public final void setAcceptCount(int accepted) { this.accepted = accepted; } public final int getRejectCount() { return rejected; } public final void setRejectCount(int rejected) { this.rejected = rejected; } public final double getMeanDeviation() { return sumDeviation / accepted; } public final double getDeviation() { return lastDeviation; } public final double getSumDeviation() { return sumDeviation; } public final void setSumDeviation(double sumDeviation) { this.sumDeviation = sumDeviation; } public final double getAcceptanceProbability() { return (double) accepted / (double) (accepted + rejected); } public double getSpan(boolean reset) { double span = 0; if( spanDeviation[1] > spanDeviation[0] && spanCount > 20 ) { span = spanDeviation[1] - spanDeviation[0]; if( reset ) { spanDeviation[0] = Double.MAX_VALUE; spanDeviation[1] = -Double.MAX_VALUE; spanCount = 0; } } return span; } public double getMeanEvaluationTime() { return (double) sumEvaluationTime / (double) (accepted + rejected); } public long getTotalEvaluationTime() { return sumEvaluationTime; } public void addEvaluationTime(long time) { sumEvaluationTime += time; } private long sumEvaluationTime = 0; private double[] spanDeviation = {Double.MAX_VALUE,-Double.MAX_VALUE}; private int spanCount = 0; private double weight = 1.0; private int startIter = 0; private int accepted = 0; private int rejected = 0; private double sumDeviation = 0.0; private double lastDeviation = 0.0; protected boolean operateAllowed = true; }