/* * SimplePrior.java * * Copyright (C) 2002-2006 Alexei Drummond and Andrew Rambaut * * This file is part of BEAST. * See the NOTICE file distributed with this work for additional * information regarding copyright ownership and licensing. * * BEAST is free software; you can redistribute it and/or modify * it under the terms of the GNU Lesser General Public License as * published by the Free Software Foundation; either version 2 * of the License, or (at your option) any later version. * * BEAST is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with BEAST; if not, write to the * Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, * Boston, MA 02110-1301 USA */ //package dr.inference.prior; // //import dr.inference.model.Parameter; /** * This class provides an abstract superclass for simple priors of single variables. * The prior has an upper and lower limit and uniform or Jeffery's prior * within these boundaries. * * @author Alexei Drummond * * @version $Id: SimplePrior.java,v 1.8 2005/05/24 20:26:00 rambaut Exp $ */ //public class SimplePrior implements Prior { // // ContinuousVariablePrior cvp; // Parameter parameter; // // public SimplePrior(ContinuousVariablePrior cvp, Parameter parameter) { // this.cvp = cvp; // this.parameter = parameter; // } // // public double getLogPrior(dr.inference.model.Model model) { // // double logPrior = 0.0; // for (int i =0; i < parameter.getDimension(); i++) { // logPrior += cvp.getLogPrior(parameter.getParameterValue(i)); // } // // return logPrior; // } // // public final String getPriorName() { // return parameter.getParameterName(); // } //}