package dr.evomodelxml.operators; import dr.evomodel.operators.AlloppMoveLegs; import dr.evomodel.speciation.AlloppSpeciesBindings; import dr.evomodel.speciation.AlloppSpeciesNetworkModel; import dr.inference.operators.MCMCOperator; import dr.xml.AbstractXMLObjectParser; import dr.xml.AttributeRule; import dr.xml.ElementRule; import dr.xml.XMLObject; import dr.xml.XMLParseException; import dr.xml.XMLSyntaxRule; /** * * @author Graham Jones * Date: 31/08/2011 */ public class AlloppMoveLegsParser extends AbstractXMLObjectParser { public static final String MOVE_LEGS = "moveLegs"; public String getParserName() { return MOVE_LEGS; } @Override public Object parseXMLObject(XMLObject xo) throws XMLParseException { AlloppSpeciesBindings apsp = (AlloppSpeciesBindings) xo.getChild(AlloppSpeciesBindings.class); AlloppSpeciesNetworkModel apspnet = (AlloppSpeciesNetworkModel) xo.getChild(AlloppSpeciesNetworkModel.class); final double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT); return new AlloppMoveLegs(apspnet, apsp, weight); } @Override public XMLSyntaxRule[] getSyntaxRules() { return new XMLSyntaxRule[]{ AttributeRule.newDoubleRule(MCMCOperator.WEIGHT), new ElementRule(AlloppSpeciesBindings.class), new ElementRule(AlloppSpeciesNetworkModel.class) }; } @Override public String getParserDescription() { return "Operator which changes the way a tetraploid subtree joins the diploid tree."; } @Override public Class getReturnType() { return AlloppMoveLegs.class; } }