NucleotideDecorator.java

package dr.app.beauti.alignmentviewer;

import jebl.evolution.sequences.Nucleotides;

import java.awt.*;

/**
 * @author Andrew Rambaut
 * @version $Id: NucleotideDecorator.java,v 1.1 2005/11/11 16:40:41 rambaut Exp $
 */
public class NucleotideDecorator implements StateDecorator {

	public static final NucleotideDecorator INSTANCE = new NucleotideDecorator();

    Paint[] paints = new Paint[Nucleotides.getStateCount()];

    public NucleotideDecorator() {
        paints[Nucleotides.A_STATE.getIndex()] = Color.RED;
        paints[Nucleotides.C_STATE.getIndex()] = Color.BLUE;
        paints[Nucleotides.G_STATE.getIndex()] = Color.BLACK;
        paints[Nucleotides.T_STATE.getIndex()] = Color.GREEN;
        paints[Nucleotides.R_STATE.getIndex()] = Color.MAGENTA;
        paints[Nucleotides.Y_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.M_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.W_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.S_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.K_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.B_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.D_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.H_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.V_STATE.getIndex()] = Color.DARK_GRAY;
        paints[Nucleotides.N_STATE.getIndex()] = Color.GRAY;
        paints[Nucleotides.UNKNOWN_STATE.getIndex()] = Color.GRAY;
        paints[Nucleotides.GAP_STATE.getIndex()] = Color.GRAY;
    }

    public Paint getStatePaint(int stateIndex) {
        if (stateIndex >= paints.length) {
            return paints[paints.length - 1];
        }
        return paints[stateIndex];
    }
}