package dr.inferencexml.model;

import dr.inference.model.MaskedParameter;
import dr.inference.model.Parameter;
import dr.xml.*;

/**
 * @author Marc A. Suchard
 */
public class MaskedParameterParser extends AbstractXMLObjectParser {

    public static final String MASKED_PARAMETER = "maskedParameter";
    public static final String MASKING = "mask";
    public static final String COMPLEMENT = "complement";
    public static final String FROM = "from";
    public static final String TO = "to";
    public static final String EVERY = "every";

    public Object parseXMLObject(XMLObject xo) throws XMLParseException {

        Parameter parameter = (Parameter) xo.getChild(Parameter.class);
        Parameter mask;

        XMLObject cxo = xo.getChild(MASKING);
        if (cxo != null) {
            mask = (Parameter) cxo.getChild(Parameter.class);
        } else {
            int from = xo.getAttribute(FROM, 1) - 1;
            int to = xo.getAttribute(TO, parameter.getDimension()) - 1;
            int every = xo.getAttribute(EVERY, 1);

            if (from < 0) throw new XMLParseException("illegal 'from' attribute in " + MASKED_PARAMETER
                    + " element");
            if (to < 0 || to < from) throw new XMLParseException("illegal 'to' attribute in "
                    + MASKED_PARAMETER + " element");
            if (every <= 0) throw new XMLParseException("illegal 'every' attribute in " + MASKED_PARAMETER
                    + " element");

            mask = new Parameter.Default(parameter.getDimension(), 0.0);
            for (int i = from; i <= to; i += every) {
                mask.setParameterValue(i, 1.0);
            }
        }

        if (mask.getDimension() != parameter.getDimension())
            throw new XMLParseException("dim(" + parameter.getId() + ") != dim(" + mask.getId() + ")");

        MaskedParameter maskedParameter = new MaskedParameter(parameter);
        boolean ones = !xo.getAttribute(COMPLEMENT, false);
        maskedParameter.addMask(mask, ones);

        return maskedParameter;
    }

    public XMLSyntaxRule[] getSyntaxRules() {
        return rules;
    }

    private final XMLSyntaxRule[] rules = {
            new ElementRule(Parameter.class),
            new ElementRule(MASKING,
                    new XMLSyntaxRule[]{
                            new ElementRule(Parameter.class)
                    }, true),
            AttributeRule.newBooleanRule(COMPLEMENT, true),
            AttributeRule.newIntegerRule(FROM, true),
            AttributeRule.newIntegerRule(TO, true),
            AttributeRule.newIntegerRule(EVERY, true),
    };

    public String getParserDescription() {
        return "A masked parameter.";
    }

    public Class getReturnType() {
        return Parameter.class;
    }

    public String getParserName() {
        return MASKED_PARAMETER;
    }
}