/*
* UniformParameterPrior.java
*
* Copyright (C) 2002-2006 Alexei Drummond and Andrew Rambaut
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.prior;
/**
* This prior provides an uniform and bounded expectation on a parameter.
*/
//public class UniformParameterPrior extends AbstractParameterPrior {
//
// private double lower;
// private double upper;
//
// public UniformParameterPrior(Parameter parameter, double lower, double upper) {
//
// this(parameter, -1, lower, upper);
// }
//
// public UniformParameterPrior(Parameter parameter, int dimension, double lower, double upper) {
// this.upper = upper;
// this.lower = lower;
// setParameter(parameter);
// setDimension(dimension);
// }
//
// public final double getLogPriorComponent(double value) {
// if (value >= lower && value <= upper) return 0.0;
// return Double.NEGATIVE_INFINITY;
// }
//
// public Element createElement(Document d) {
// Element e = d.createElement("uniformPrior");
// e.setAttribute("lower", lower + "");
// e.setAttribute("upper", upper + "");
// return e;
// }
//
// public double getLowerLimit() { return lower; }
// public double getUpperLimit() { return upper; }
//
// public String toString() {
//
// StringBuilder buffer = new StringBuilder();
// if (lower == -Double.MAX_VALUE) {
// buffer.append("(").append(formatter.format(Double.NEGATIVE_INFINITY).trim());
// } else if (lower == Double.MIN_VALUE) {
// buffer.append("(").append(formatter.format(0.0).trim());
// } else {
// buffer.append("[").append(formatter.format(lower).trim());
// }
//
// buffer.append(", ");
//
// if (upper == Double.MAX_VALUE) {
// buffer.append(formatter.format(Double.POSITIVE_INFINITY).trim()).append(")");
// } else if (upper == -Double.MIN_VALUE) {
// buffer.append(formatter.format(0.0).trim()).append(")");
// } else {
// buffer.append(formatter.format(upper).trim()).append("]");
// }
//
// return buffer.toString();
// }
//
// public String toHTML() {
// return "<font color=\"#FF00FF\">" + toString() + "</font>";
// }
//}