package dr.app.phylogeography.tools.kml; /** * @author Andrew Rambaut * @author Philippe Lemey * @version $Id$ */ public class TreeDefinition { public TreeDefinition(TreeType treeType, String traitName, String latitudeName, String longitudeName, double plotAltitude, double rootFraction, double arcAltitude, boolean taxaVisible, BranchStyle branchStyle, SurfaceDecoration locationContours, SurfaceDecoration groundContours, BranchStyle projections) { this.treeType = treeType; this.traitName = traitName; this.latitudeName = latitudeName; this.longitudeName = longitudeName; this.plotAltitude = plotAltitude; this.rootFraction = rootFraction; this.arcAltitude = arcAltitude; this.taxaVisible = taxaVisible; this.branchStyle = branchStyle; this.locationContours = locationContours; this.groundContours = groundContours; this.projections = projections; } public TreeType getTreeType() { return treeType; } public void setTreeType(TreeType treeType) { this.treeType = treeType; } public String getTraitName() { return traitName; } public void setTraitName(String traitName) { this.traitName = traitName; } public String getLatitudeName() { return latitudeName; } public void setLatitudeName(String latitudeName) { this.latitudeName = latitudeName; } public String getLongitudeName() { return longitudeName; } public void setLongitudeName(String longitudeName) { this.longitudeName = longitudeName; } public double getPlotAltitude() { return plotAltitude; } public void setPlotAltitude(double plotAltitude) { this.plotAltitude = plotAltitude; } public double getRootFraction() { return rootFraction; } public void setRootFraction(double rootFraction) { this.rootFraction = rootFraction; } public double getArcAltitude() { return arcAltitude; } public void setArcAltitude(double arcAltitude) { this.arcAltitude = arcAltitude; } public boolean isTaxaVisible() { return taxaVisible; } public void setTaxaVisible(boolean taxaVisible) { this.taxaVisible = taxaVisible; } public BranchStyle getBranchDecoration() { return branchStyle; } public void setBranchDecoration(BranchStyle branchStyle) { this.branchStyle = branchStyle; } public SurfaceDecoration getLocationContours() { return locationContours; } public void setLocationContours(SurfaceDecoration locationContours) { this.locationContours = locationContours; } public SurfaceDecoration getGroundContours() { return groundContours; } public void setGroundContours(SurfaceDecoration groundContours) { this.groundContours = groundContours; } public BranchStyle getProjections() { return projections; } public void setProjections(BranchStyle projections) { this.projections = projections; } private TreeType treeType; private String traitName; private String latitudeName; private String longitudeName; private double plotAltitude = 500000; private double rootFraction = 0.05; // additional fraction of the total plotHeight for the root branch private double arcAltitude = 10000; // this is the factor with which to multiply the time of the branch to get the altitude for that branch in the surface Tree private boolean taxaVisible = false; private BranchStyle branchStyle; private SurfaceDecoration locationContours; private SurfaceDecoration groundContours; private BranchStyle projections; }