/*
* AbstractParameterPrior.java
*
* Copyright (C) 2002-2006 Alexei Drummond and Andrew Rambaut
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.prior;
/**
* This class provides an abstract superclass for all parameter priors.
*/
//public abstract class AbstractParameterPrior implements ParameterPrior {
//
// //************************************************************************
// // abstract methods
// //************************************************************************
//
// /**
// * @return the log prior of a single-value component of the parameter.
// */
// public abstract double getLogPriorComponent(double value);
//
// //************************************************************************
// // final methods
// //************************************************************************
//
// public final void setParameter(Parameter param) { this.parameter = param; }
// public final Parameter getParameter() { return parameter; }
// public final void setDimension(int dim) { dimension = dim; }
//
// public final double getLogPrior(Model model) {
//
// if (dimension == -1) {
// double logL = 0.0;
// for (int i =0; i < parameter.getDimension(); i++) {
// logL += getLogPriorComponent(parameter.getParameterValue(i));
// }
// return logL;
// } else return getLogPriorComponent(parameter.getParameterValue(dimension));
// }
//
// public final String getPriorName() { return toString(); }
//
// //************************************************************************
// // protected instance variables
// //************************************************************************
//
// protected NumberFormatter formatter = new NumberFormatter(6);
//
// //************************************************************************
// // private instance variables
// //************************************************************************
//
// /** the parameter this prior acts on */
// private Parameter parameter = null;
//
// /** the dimension of the parameter that this prior works on, -1 signifies all dimensions */
// private int dimension = -1;
//}