/*
* CompoundLikelihoodParser.java
*
* Copyright (C) 2002-2012 Alexei Drummond, Andrew Rambaut & Marc A. Suchard
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.app.beagle.evomodel.parsers;
import dr.inference.model.*;
import dr.xml.*;
import java.util.logging.Logger;
/**
* @author Alexei Drummond
* @author Andrew Rambaut
* @author Marc Suchard
*/
public class CompoundLikelihoodParser extends AbstractXMLObjectParser {
public static final String LIKELIHOOD = "likelihood";
public String getParserName() {
return LIKELIHOOD;
}
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
ThreadedCompoundLikelihood compoundLikelihood = new ThreadedCompoundLikelihood();
for (int i = 0; i < xo.getChildCount(); i++) {
if (xo.getChild(i) instanceof Likelihood) {
compoundLikelihood.addLikelihood((Likelihood) xo.getChild(i));
} else {
Object rogueElement = xo.getChild(i);
throw new XMLParseException("An element (" + rogueElement + ") which is not a likelihood has been added to the "
+ LIKELIHOOD + " element");
}
}
Logger.getLogger("dr.evomodel").info("Multithreaded Likelihood, using "
+ compoundLikelihood.getLikelihoodCount() + " threads.");
return compoundLikelihood;
}
//************************************************************************
// AbstractXMLObjectParser implementation
//************************************************************************
public String getParserDescription() {
return "A likelihood function which is simply the product of its component likelihood functions.";
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
new ElementRule(Likelihood.class, 1, Integer.MAX_VALUE),
};
public Class getReturnType() {
return CompoundLikelihood.class;
}
}