package dr.inference.model; import dr.math.matrixAlgebra.Matrix; import dr.xml.*; /** * @author Marc A. Suchard */ public class MatrixInverseStatistic extends Statistic.Abstract implements VariableListener { public static final String INVERSE_STATISTIC = "matrixInverse"; public MatrixInverseStatistic(MatrixParameter matrix) { this.matrix = matrix; matrix.addParameterListener(this); } public int getDimension() { return matrix.getDimension(); } public double getStatisticValue(int dim) { if (!inverseKnown) { inverse = (new Matrix(matrix.getParameterAsMatrix()).inverse().toComponents()); inverseKnown = true; } int x = dim / matrix.getColumnDimension(); int y = dim - x * matrix.getColumnDimension(); return inverse[x][y]; } public String getDimensionName(int dim) { return getStatisticName() + "." + matrix.getDimensionName(dim); } public void variableChangedEvent(Variable variable, int index, Parameter.ChangeType type) { inverseKnown = false; } public static XMLObjectParser PARSER = new AbstractXMLObjectParser() { public String getParserName() { return INVERSE_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { MatrixParameter matrix = (MatrixParameter) xo.getChild(MatrixParameter.class); if (matrix.getColumnDimension() != matrix.getRowDimension()) throw new XMLParseException("Only square matrices can be inverted"); return new MatrixInverseStatistic(matrix); } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a statistic that is the matrix inverse of the child statistic."; } public Class getReturnType() { return MatrixInverseStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ new ElementRule(MatrixParameter.class) }; }; private boolean inverseKnown = false; private double[][] inverse; private MatrixParameter matrix; }