package dr.inferencexml.model; import dr.inference.model.RPNcalculatorStatistic; import dr.inference.model.Statistic; import dr.xml.*; import java.util.ArrayList; import java.util.HashMap; import java.util.List; import java.util.Map; /** */ public class RPNcalculatorStatisticParser extends AbstractXMLObjectParser { public static String RPN_STATISTIC = "RPNcalculator"; public static String VARIABLE = "variable"; public static String EXPRESSION = "expression"; public String getParserName() { return RPN_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { List<String> expressions = new ArrayList<String>(); List<String> expressionNames = new ArrayList<String>(); Map<String, Statistic> variables = new HashMap<String, Statistic>(); for(int i = 0; i < xo.getChildCount(); ++i) { final XMLObject child = (XMLObject)xo.getChild(i); if( child.getName().equals(EXPRESSION) ) { expressions.add(child.getStringChild(0)); String name = child.hasAttribute(Statistic.NAME) ? child.getStringAttribute(Statistic.NAME) : ("expression_" + expressionNames.size()); expressionNames.add(name); } else if( child.getName().equals(VARIABLE) ) { Statistic s = (Statistic)child.getChild(Statistic.class); if( s.getDimension() != 1 ) { throw new XMLParseException("Sorry, no support for multi-dimentional yet"); } //assert s.getDimension() == 1; // for now String name = child.hasAttribute(Statistic.NAME) ? child.getStringAttribute(Statistic.NAME) : s.getDimensionName(0); variables.put(name, s); } else { throw new XMLParseException("Unknown element found in " + getParserName() + " element:" + child); } } final String name = xo.hasAttribute(Statistic.NAME) ? xo.getStringAttribute(Statistic.NAME) : RPN_STATISTIC; final String[] e = expressions.toArray(new String[expressions.size()]); final String[] enames = expressionNames.toArray(new String[expressionNames.size()]); try { return new RPNcalculatorStatistic(name, e, enames, variables); } catch ( RuntimeException err) { throw new XMLParseException(err.getMessage()); } } public String getParserDescription() { return "This element returns a statistic evaluated from arbitrary expression."; } public Class getReturnType() { return RPNcalculatorStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private final XMLSyntaxRule[] rules = { new ElementRule(EXPRESSION, new XMLSyntaxRule[] { new ElementRule(String.class) }, 1, Integer.MAX_VALUE), new ElementRule(VARIABLE, new XMLSyntaxRule[] { new ElementRule(Statistic.class) } , 1, Integer.MAX_VALUE) }; }