package dr.inferencexml.operators;
import dr.inference.model.Parameter;
import dr.inference.operators.CoercableMCMCOperator;
import dr.inference.operators.CoercionMode;
import dr.inference.operators.DeltaMixOperator;
import dr.inference.operators.MCMCOperator;
import dr.xml.*;
/**
*/
public class DeltaMixOperatorParser extends AbstractXMLObjectParser {
public static final String DELTA_MIX = "deltaMixOperator";
public static final String DELTA = "delta";
public static final String PARAMETER_WEIGHTS = "parameterWeights";
public String getParserName() {
return DELTA_MIX;
}
public Object parseXMLObject(XMLObject xo) throws XMLParseException {
CoercionMode mode = CoercionMode.parseMode(xo);
double weight = xo.getDoubleAttribute(MCMCOperator.WEIGHT);
double delta = xo.getDoubleAttribute(DELTA);
if (delta <= 0.0) {
throw new XMLParseException("delta must be greater than 0.0");
}
Parameter parameter = (Parameter) xo.getChild(Parameter.class);
int[] parameterWeights;
if (xo.hasAttribute(PARAMETER_WEIGHTS)) {
parameterWeights = xo.getIntegerArrayAttribute(PARAMETER_WEIGHTS);
System.out.print("Parameter weights for delta exchange are: ");
for (int parameterWeight : parameterWeights) {
System.out.print(parameterWeight + "\t");
}
System.out.println();
} else {
parameterWeights = new int[parameter.getDimension()];
for (int i = 0; i < parameterWeights.length; i++) {
parameterWeights[i] = 1;
}
}
if (parameterWeights.length != parameter.getDimension()) {
throw new XMLParseException("parameter weights have the same length as parameter");
}
return new DeltaMixOperator(parameter, parameterWeights, delta, weight, mode);
}
//************************************************************************
// AbstractXMLObjectParser implementation
//************************************************************************
public String getParserDescription() {
return "This element returns a scale operator on a given parameter.";
}
public Class getReturnType() {
return MCMCOperator.class;
}
public XMLSyntaxRule[] getSyntaxRules() {
return rules;
}
private final XMLSyntaxRule[] rules = {
AttributeRule.newDoubleRule(DELTA),
AttributeRule.newIntegerArrayRule(PARAMETER_WEIGHTS, true),
AttributeRule.newDoubleRule(MCMCOperator.WEIGHT),
AttributeRule.newBooleanRule(CoercableMCMCOperator.AUTO_OPTIMIZE, true),
new ElementRule(Parameter.class)
};
}