/*
* BooleanLikelihood.java
*
* Copyright (C) 2002-2006 Alexei Drummond and Andrew Rambaut
*
* This file is part of BEAST.
* See the NOTICE file distributed with this work for additional
* information regarding copyright ownership and licensing.
*
* BEAST is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as
* published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* BEAST is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with BEAST; if not, write to the
* Free Software Foundation, Inc., 51 Franklin St, Fifth Floor,
* Boston, MA 02110-1301 USA
*/
package dr.inference.model;
import java.util.ArrayList;
/**
* A class that returns a log likelihood of a set of boolean statistics.
* If all the statistics are true then it returns 0.0 otherwise -INF.
*
* @author Andrew Rambaut
*
* @version $Id: BooleanLikelihood.java,v 1.8 2005/05/24 20:25:59 rambaut Exp $
*/
public class BooleanLikelihood extends Likelihood.Abstract {
public BooleanLikelihood() {
super(null);
}
/**
* Adds a statistic, this is the data for which the likelihood is calculated.
*/
public void addData(BooleanStatistic data) { dataList.add(data); }
protected ArrayList<BooleanStatistic> dataList = new ArrayList<BooleanStatistic>();
// **************************************************************
// Likelihood IMPLEMENTATION
// **************************************************************
/**
* Overridden to always return false.
*/
protected boolean getLikelihoodKnown() {
return false;
}
/**
* Calculate the log likelihood of the current state.
* If all the statistics are true then it returns 0.0 otherwise -INF.
* @return the log likelihood.
*/
public double calculateLogLikelihood() {
if (getBooleanState()) {
return Double.NEGATIVE_INFINITY;
} else {
return 0.0;
}
}
public boolean getBooleanState() {
for (BooleanStatistic statistic : dataList) {
for (int j = 0; j < statistic.getDimension(); j++) {
if (!statistic.getBoolean(j)) {
return true;
}
}
}
return false;
}
/**
* Boolean likelihoods would generally want to be evaluated early to allow for a quick
* termination of the evaluation in the case of a zero likelihood.
* @return
*/
public boolean evaluateEarly() {
return true;
}
}