DiscretePriorDialog.java

package dr.app.oldbeauti;

import dr.app.gui.components.RealNumberField;
import jam.panels.OptionsPanel;

import javax.swing.*;
import javax.swing.border.EmptyBorder;
import java.awt.event.ItemEvent;
import java.awt.event.ItemListener;

/**
 * @author			Andrew Rambaut
 * @author			Alexei Drummond
 * @version			$Id: PriorDialog.java,v 1.4 2006/09/05 13:29:34 rambaut Exp $
 */
public class DiscretePriorDialog {

	private JFrame frame;

	public static String[] priors = {
			"Uniform",
			"Poisson"};

	private String[] argumentNames = new String[] {
			"Poisson Mean", "Zero Offset"
	};

	private JComboBox priorCombo;
	private int[][] argumentIndices = { {}, {0, 1} };
	private RealNumberField initialField = new RealNumberField();
	private RealNumberField[] argumentFields = new RealNumberField[argumentNames.length];
	private OptionsPanel optionPanel;

	private BeautiOptions.Parameter parameter;

	public DiscretePriorDialog(JFrame frame) {
		this.frame = frame;

		priorCombo = new JComboBox(priors);

		initialField.setColumns(8);
		for (int i = 0; i < argumentNames.length; i++) {
			argumentFields[i] = new RealNumberField();
			argumentFields[i].setColumns(8);
		}

		optionPanel = new OptionsPanel(12,12);
	}

	public int showDialog(final BeautiOptions.Parameter parameter) {

		this.parameter = parameter;

		priorCombo.setSelectedIndex(parameter.priorType == PriorType.POISSON_PRIOR ? 1 : 0);

		if (!parameter.isStatistic) {
			initialField.setRange(parameter.lower, parameter.upper);
			initialField.setValue(parameter.initial);
		}

		setArguments();
		setupComponents();

		JOptionPane optionPane = new JOptionPane(optionPanel,
				JOptionPane.QUESTION_MESSAGE,
				JOptionPane.OK_CANCEL_OPTION,
				null,
				null,
				null);
		optionPane.setBorder(new EmptyBorder(12, 12, 12, 12));

		final JDialog dialog = optionPane.createDialog(frame, "Prior for Parameter");
		dialog.pack();

		priorCombo.addItemListener(new ItemListener() {
			public void itemStateChanged(ItemEvent e) {
				setupComponents();
				dialog.pack();
				dialog.repaint();
			}});

		dialog.setVisible(true);

		int result = JOptionPane.CANCEL_OPTION;
		Integer value = (Integer)optionPane.getValue();
		if (value != null && value != -1) {
			result = value;
		}

		if (result == JOptionPane.OK_OPTION) {
			getArguments();
		}

		return result;
	}

	private void setArguments() {
		argumentFields[0].setRange(0.0, Double.MAX_VALUE);
		argumentFields[0].setValue(parameter.poissonMean);
		argumentFields[1].setValue(parameter.poissonOffset);

	}

	private void getArguments() {
		parameter.priorType = priorCombo.getSelectedIndex() == 0 ? PriorType.UNIFORM_PRIOR : PriorType.POISSON_PRIOR;

		if (initialField.getValue() != null) parameter.initial = initialField.getValue();

		switch (parameter.priorType) {
			case UNIFORM_PRIOR:
				if (argumentFields[0].getValue() != null) parameter.uniformLower = argumentFields[0].getValue();
				if (argumentFields[1].getValue() != null) parameter.uniformUpper = argumentFields[1].getValue();
				break;
			case POISSON_PRIOR:
				if (argumentFields[0].getValue() != null) parameter.poissonMean = argumentFields[0].getValue();
				if (argumentFields[1].getValue() != null) parameter.poissonOffset = argumentFields[1].getValue();
				break;
			default: throw new IllegalArgumentException("Unknown prior index");
		}
	}

	private void setupComponents() {
		optionPanel.removeAll();

		optionPanel.addSpanningComponent(new JLabel("Select prior distribution for " + parameter.getName()));

		optionPanel.addComponents(new JLabel("Prior Distribution:"), priorCombo);
		int priorType = priorCombo.getSelectedIndex();

		optionPanel.addSeparator();

		for (int i = 0; i < argumentIndices[priorType].length; i++) {
			int k = argumentIndices[priorType][i];
			optionPanel.addComponentWithLabel(argumentNames[k] + ":", argumentFields[k]);
		}


		if (!parameter.isStatistic) {
			optionPanel.addSeparator();
			optionPanel.addComponents(new JLabel("Initial Value:"), initialField);
		}
	}

}