package dr.inferencexml.model; import dr.inference.model.ExpressionStatistic; import dr.inference.model.Statistic; import dr.xml.*; /** */ public class ExpressionStatisticParser extends AbstractXMLObjectParser { public static String EXPRESSION_STATISTIC = "expressionStatistic"; public static String VARIABLES = "variables"; public static String EXPRESSION = "expression"; public String getParserName() { return EXPRESSION_STATISTIC; } public Object parseXMLObject(XMLObject xo) throws XMLParseException { XMLObject cxo = xo.getChild(EXPRESSION); String expression = cxo.getStringChild(0); ExpressionStatistic expStatistic = new ExpressionStatistic(EXPRESSION_STATISTIC, expression); System.out.println("Expression: " + expression); System.out.println(" variables:"); cxo = xo.getChild(VARIABLES); for (int i = 0; i < cxo.getChildCount(); i++) { Object child = cxo.getChild(i); if (child instanceof Statistic) { Statistic stat = (Statistic) child; expStatistic.addStatistic(stat); System.out.println(" " + stat.getStatisticName() + "=" + stat.getStatisticValue(0)); } else { throw new XMLParseException("Unknown element found in " + getParserName() + " element:" + child); } } System.out.println(" value: " + expStatistic.getStatisticValue(0)); return expStatistic; } //************************************************************************ // AbstractXMLObjectParser implementation //************************************************************************ public String getParserDescription() { return "This element returns a statistic that is the mean of the child statistics."; } public Class getReturnType() { return ExpressionStatistic.class; } public XMLSyntaxRule[] getSyntaxRules() { return rules; } private XMLSyntaxRule[] rules = new XMLSyntaxRule[]{ new ElementRule(EXPRESSION, new XMLSyntaxRule[]{new ElementRule(String.class)}), new ElementRule(VARIABLES, new XMLSyntaxRule[]{new ElementRule(Statistic.class, 1, Integer.MAX_VALUE)}) }; }