/* * #%L * org.gitools.ui.app * %% * Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.core.commands; import com.google.common.base.Strings; import org.gitools.api.analysis.IProgressMonitor; import org.gitools.heatmap.Heatmap; import org.gitools.ui.core.Application; import org.gitools.ui.core.components.editor.AbstractEditor; public abstract class HeatmapCommand extends AbstractCommand { protected final String LAST = "LAST"; protected String heatmapid; protected Heatmap heatmap; public HeatmapCommand(String heatmap) { this.heatmapid = heatmap; } @Override public void execute(IProgressMonitor monitor) throws CommandException { findHeatmap(monitor); } protected void findHeatmap(IProgressMonitor monitor) throws CommandException { Application appframe = Application.get(); if (Strings.isNullOrEmpty(heatmapid)) { AbstractEditor editor = Application.get().getEditorsPanel().getSelectedEditor(); if (editor.getModel() != null && editor.getModel() instanceof Heatmap) { heatmap = (Heatmap) editor.getModel(); return; } else { throw new CommandException("No heatmap selected or open. Indicate name or open a heatmap (load command)"); } } String availableHeatmaps = "<br/>Available hetamaps: "; monitor.begin("Executing command ...", 1); if (heatmapid.equals(LAST)) { AbstractEditor editor = appframe.getEditorsPanel().getSelectedEditor(); if (editor.getModel() != null && editor.getModel() instanceof Heatmap) { heatmap = (Heatmap) editor.getModel(); } } else { for (AbstractEditor editor : appframe.getEditorsPanel().getEditors()) { if (editor.getModel() != null && editor.getModel() instanceof Heatmap) { if (editor.getName().equals(heatmapid)) { heatmap = (Heatmap) editor.getModel(); } else { availableHeatmaps += "<br/>- " + editor.getName(); } } } } if (heatmap == null) { throw new CommandException("No such heatmap loaded: " + heatmapid + availableHeatmaps); } } }