/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.analysis;
import org.gitools.api.analysis.IProgressMonitor;
public abstract class AnalysisCommand {
protected String workdir;
protected String fileName;
protected boolean storeAnalysis;
protected AnalysisCommand(String workdir, String fileName) {
this.workdir = workdir;
this.fileName = fileName;
this.storeAnalysis = true;
}
public void setStoreAnalysis(boolean storeAnalysis) {
this.storeAnalysis = storeAnalysis;
}
public abstract void run(IProgressMonitor monitor) throws AnalysisException;
}