/*
* #%L
* org.gitools.ui.app
* %%
* Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.plugins.mutex.control;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.api.matrix.MatrixDimensionKey;
import org.gitools.plugins.mutex.sort.MutualExclusiveMatrixViewSorter;
import org.gitools.ui.core.commands.HeaderCommand;
import org.gitools.ui.platform.settings.Settings;
import java.util.HashSet;
import java.util.List;
public class SortMutualExclusiveCommand extends HeaderCommand {
private final List<String> items;
public SortMutualExclusiveCommand(String heatmap, MatrixDimensionKey dimension, String sort, List<String> items, String pattern) {
super(heatmap, dimension, sort, pattern);
this.items = items;
}
@Override
public void execute(IProgressMonitor monitor) throws CommandException {
super.execute(monitor);
dimension.equals(MatrixDimensionKey.COLUMNS);
MutualExclusiveMatrixViewSorter.sortByMutualExclusion(
heatmap,
pattern,
new HashSet<>(items),
false,
dimension.equals(MatrixDimensionKey.COLUMNS),
monitor,
Settings.get().isShowMutualExclusionProgress()
);
}
}