/* * #%L * gitools-ui-app * %% * Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.ui.app.actions.edit; import org.apache.commons.lang.StringUtils; import org.gitools.api.matrix.view.IMatrixView; import org.gitools.heatmap.Heatmap; import org.gitools.heatmap.HeatmapDimension; import org.gitools.heatmap.header.ColoredLabel; import org.gitools.heatmap.header.HeatmapColoredLabelsHeader; import org.gitools.heatmap.header.HeatmapHeader; import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader; import org.gitools.ui.core.Application; import org.gitools.ui.core.HeatmapPosition; import org.gitools.ui.core.actions.AbstractAction; import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction; import java.awt.event.ActionEvent; import java.util.ArrayList; public class SelectLabelHeaderAction extends AbstractAction implements IHeatmapHeaderAction { private String annotationValue; private HeatmapColoredLabelsHeader coloredHeader; public SelectLabelHeaderAction() { super("<html><i>Add</i> label header to selection</html>"); } @Override public boolean isEnabledByModel(Object model) { return model instanceof Heatmap || model instanceof IMatrixView; } @Override public void actionPerformed(ActionEvent e) { if (annotationValue == null) { return; } HeatmapDimension dimension = coloredHeader.getHeatmapDimension(); ArrayList<String> addToSelected = new ArrayList(); for (String identifier : dimension) { String value = coloredHeader.getColoredLabel(identifier).getValue(); if (StringUtils.equals(value, annotationValue)) { addToSelected.add(identifier); } } if (addToSelected.size() > 0) { int selectedBefore = dimension.getSelected().size(); dimension.getSelected().addAll(addToSelected); int selectedDifference = Math.abs(selectedBefore - dimension.getSelected().size()); Application.get().showNotification("Selected " + selectedDifference + " new " + dimension.getId().getLabel() + "s"); } else { Application.get().showNotification("Added none to selected"); } } @Override public void onConfigure(HeatmapHeader header, HeatmapPosition position) { if(header instanceof HierarchicalClusterHeatmapHeader) { header = ((HierarchicalClusterHeatmapHeader) header).getInteractionLevelHeader(); } setEnabled(header instanceof HeatmapColoredLabelsHeader); if (header instanceof HeatmapColoredLabelsHeader) { coloredHeader = (HeatmapColoredLabelsHeader) header; annotationValue = position.getHeaderAnnotation(); ColoredLabel coloredLabel = coloredHeader.getAssignedColoredLabel(annotationValue); String label = coloredHeaderLabel(coloredHeader, coloredLabel); setName("<html><i>Select all</i> <b>" + label + "</b> labels</html>"); } } }