/*
* #%L
* org.gitools.ui.app
* %%
* Copyright (C) 2013 - 2014 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.fileimport.wizard.text;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.api.matrix.IMatrixLayer;
import org.gitools.heatmap.Heatmap;
import org.gitools.heatmap.HeatmapLayer;
import org.gitools.heatmap.decorator.impl.CategoricalDecorator;
import org.gitools.ui.app.heatmap.editor.HeatmapEditor;
import org.gitools.ui.app.heatmap.panel.settings.layer.ColorScaleSection;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.commands.AbstractCommand;
import org.gitools.ui.core.components.editor.AbstractEditor;
import org.gitools.ui.platform.icons.IconNames;
import org.gitools.ui.platform.settings.ISettingsSection;
import org.gitools.ui.platform.settings.SettingsDialog;
import org.gitools.ui.platform.settings.SettingsPanel;
import org.gitools.utils.color.ColorGenerator;
import org.gitools.utils.colorscale.ColorScalePoint;
import java.util.*;
/**
* Created by mschroeder on 5/28/14.
*/
public class CommandEditAllColorScales extends AbstractCommand {
private Map<IMatrixLayer, Map<String, Integer>> factorMap;
public CommandEditAllColorScales(Map<IMatrixLayer, Map<String, Integer>> factorMap) {
super();
this.factorMap = factorMap;
}
@Override
public void run() {
super.run();
}
@Override
public void execute(IProgressMonitor monitor) throws CommandException {
AbstractEditor editor = Application.get().getEditorsPanel().getSelectedEditor();
if (editor instanceof HeatmapEditor) {
Heatmap heatmap = ((HeatmapEditor) editor).getModel();
List<ISettingsSection> sections = new ArrayList<>();
for (HeatmapLayer layer : heatmap.getLayers()) {
setCategorical(layer);
ColorScaleSection colorSection = new ColorScaleSection(layer);
colorSection.setName(layer.getName());
sections.add(colorSection);
}
SettingsPanel settingsPanel = new SettingsPanel(
"Color scale options for " + editor.getName(),
"",
IconNames.logoNoText,
sections
);
SettingsDialog dialog = new SettingsDialog(Application.get(), settingsPanel, sections.get(0).getName()) {
@Override
protected void apply() {
}
};
dialog.setVisible(true);
}
}
private void setCategorical(HeatmapLayer layer) {
if (factorMap != null) {
Map<String, Integer> layerFactorMap = null;
for (IMatrixLayer factorLayer : factorMap.keySet()) {
if (factorLayer.getId().equals(layer.getId())) {
layerFactorMap = factorMap.get(factorLayer);
}
}
if (layerFactorMap != null) {
CategoricalDecorator decorator = new CategoricalDecorator();
ColorGenerator cg = new ColorGenerator();
Set<ColorScalePoint> factorPoints = new HashSet<>();
for (String factor : layerFactorMap.keySet()) {
factorPoints.add(new ColorScalePoint(layerFactorMap.get(factor), cg.next(factor), factor));
}
decorator.setCategories(factorPoints.toArray(new ColorScalePoint[factorPoints.size()]));
layer.setDecorator(decorator);
}
}
}
}