/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.wizard;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.datasources.modules.importer.ModuleCategory;
import org.gitools.datasources.modules.importer.ModulesImporter;
import org.gitools.datasources.modules.importer.Organism;
import org.gitools.datasources.modules.importer.Version;
import org.gitools.ui.core.Application;
import org.gitools.ui.core.pages.common.FilteredListPage;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import javax.swing.*;
public class ModulesOrganismPage extends FilteredListPage {
private final ModulesImporter importer;
private ModuleCategory modCategory;
private Version version;
private boolean loaded;
public ModulesOrganismPage(ModulesImporter importer) {
this.importer = importer;
this.loaded = false;
setTitle("Select organism");
}
@Override
public void updateControls() {
super.updateControls();
if (!loaded || modCategory != importer.getModuleCategory() || version != importer.getVersion()) {
JobThread.execute(Application.get(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) {
try {
monitor.begin("Getting available organisms ...", 1);
modCategory = importer.getModuleCategory();
version = importer.getVersion();
final Organism[] organisms = importer.getOrganisms();
SwingUtilities.invokeLater(new Runnable() {
@Override
public void run() {
setListData(organisms);
for (Organism o : organisms)
if (o.getName().equals("homo sapiens")) {
setSelectedValue(o);
}
loaded = true;
}
});
} catch (Exception ex) {
monitor.exception(ex);
}
}
});
}
}
@Override
public void updateModel() {
importer.setOrganism(getOrganism());
}
private Organism getOrganism() {
return (Organism) getSelectedValue();
}
}