/* * #%L * org.gitools.matrix * %% * Copyright (C) 2013 - 2016 Universitat Pompeu Fabra - Biomedical Genomics group * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-3.0.html>. * #L% */ package org.gitools.matrix.transform; import org.gitools.api.matrix.ConfigurableTransformFunction; import org.gitools.api.matrix.IMatrixPosition; import org.gitools.matrix.transform.parameters.DoubleParameter; public class SumConstantFunction extends ConfigurableTransformFunction { public static final String CONSTANT = "Constant"; DoubleParameter doubleParameter; public SumConstantFunction() { super("Sum/Subtract", "Sums/Subtracts the defined constant to given value"); } @Override public Double apply(Double value, IMatrixPosition position) { if (value != null) { return value + doubleParameter.getParameterValue(); } return null; } @Override public SumConstantFunction createNew() { return new SumConstantFunction(); } @Override protected void createDefaultParameters() { doubleParameter = new DoubleParameter(); doubleParameter.setDescription("Define a constant which will be summed to all values"); doubleParameter.setParameterValue(1.0); addParameter(CONSTANT, doubleParameter); } @Override public String getName() { String operation = doubleParameter.getParameterValue() < 0 ? "Subtract " : "Sum "; return operation + Math.abs(doubleParameter.getParameterValue()); } public String getDescription() { return this.description.replace("constant", "constant (" + this.doubleParameter.getParameterValue() + ")"); } }