/*
* #%L
* gitools-kegg
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.datasources.kegg.modules;
import org.gitools.datasources.biomart.restful.model.DatasetInfo;
import org.gitools.datasources.kegg.service.domain.KeggOrganism;
import org.gitools.datasources.modules.importer.Organism;
import org.gitools.datasources.modules.importer.RefImpl;
public class EnsemblKeggOrganism extends RefImpl implements Organism {
private DatasetInfo ensemblDataset;
private KeggOrganism keggDef;
public EnsemblKeggOrganism(String id, String name, DatasetInfo dataset) {
super(id, name);
this.ensemblDataset = dataset;
}
public EnsemblKeggOrganism(String id, String name, KeggOrganism def) {
super(id, name);
this.keggDef = def;
}
public DatasetInfo getEnsemblDataset() {
return ensemblDataset;
}
public void setEnsemblDataset(DatasetInfo ensemblDataset) {
this.ensemblDataset = ensemblDataset;
}
public KeggOrganism getKeggOrganism() {
return keggDef;
}
public void setKeggDef(KeggOrganism keggDef) {
this.keggDef = keggDef;
}
@Override
public String getRef() {
StringBuilder sb = new StringBuilder();
sb.append(super.getRef()).append("[");
if (ensemblDataset != null) {
sb.append("ENSEMBL");
}
if (ensemblDataset != null && keggDef != null) {
sb.append(", ");
}
if (keggDef != null) {
sb.append("KEGG");
}
sb.append("]");
return sb.toString();
}
}