/*
* #%L
* gitools-ui-app
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.ui.app.actions.data.analysis;
import com.google.common.base.Strings;
import org.gitools.api.analysis.IProgressMonitor;
import org.gitools.heatmap.header.HeatmapHeader;
import org.gitools.heatmap.header.HierarchicalCluster;
import org.gitools.heatmap.header.HierarchicalClusterHeatmapHeader;
import org.gitools.ui.core.HeatmapPosition;
import org.gitools.ui.core.actions.HeatmapAction;
import org.gitools.ui.core.actions.dynamicactions.IHeatmapHeaderAction;
import org.gitools.ui.platform.progress.JobRunnable;
import org.gitools.ui.platform.progress.JobThread;
import java.awt.event.ActionEvent;
public class SortByHierarchicalClusteringAction extends HeatmapAction implements IHeatmapHeaderAction {
private HierarchicalClusterHeatmapHeader header;
private HierarchicalCluster hierarchicalCluster;
public SortByHierarchicalClusteringAction() {
super("<html><i>sort by clustering</i></html>");
}
@Override
public void actionPerformed(ActionEvent e) {
if (header == null) {
return;
}
JobThread.execute(this.getParentWindow(), new JobRunnable() {
@Override
public void run(IProgressMonitor monitor) throws Exception {
SortByHierarchicalClusteringCommand command = new SortByHierarchicalClusteringCommand(header.getHeatmapDimension(),
header.getHierarchicalCluster());
command.execute(monitor);
}
});
}
@Override
public void onConfigure(HeatmapHeader header, HeatmapPosition position) {
setEnabled(header instanceof HierarchicalClusterHeatmapHeader
&& ((HierarchicalClusterHeatmapHeader) header).getHierarchicalCluster() != null);
if (header instanceof HierarchicalClusterHeatmapHeader) {
this.header = (HierarchicalClusterHeatmapHeader) header;
hierarchicalCluster = ((HierarchicalClusterHeatmapHeader) header).getHierarchicalCluster();
if (!Strings.isNullOrEmpty(position.getHeaderAnnotation())) {
String clusterName = position.getHeaderAnnotation();
this.setName("<html><i>Sort by</i> hierarchical clustering</html>");
} else {
this.setName("<html><i>Sort by</i> hierarchical clustering</html>");
}
}
}
}