/*
* #%L
* gitools-core
* %%
* Copyright (C) 2013 Universitat Pompeu Fabra - Biomedical Genomics group
* %%
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as
* published by the Free Software Foundation, either version 3 of the
* License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public
* License along with this program. If not, see
* <http://www.gnu.org/licenses/gpl-3.0.html>.
* #L%
*/
package org.gitools.matrix.model;
import com.jgoodies.binding.beans.Model;
import org.gitools.api.analysis.IAggregator;
import org.gitools.api.matrix.IKey;
import org.gitools.api.matrix.IMatrixLayer;
import org.gitools.api.matrix.SortDirection;
import org.gitools.api.matrix.ValueTranslator;
import org.gitools.matrix.model.matrix.element.LayerDef;
import org.gitools.utils.aggregation.SumAggregator;
import org.gitools.utils.translators.ValueTranslatorFactory;
import javax.xml.bind.annotation.*;
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
import java.util.Set;
@XmlAccessorType(XmlAccessType.FIELD)
public class MatrixLayer<T> extends Model implements IMatrixLayer<T> {
public static final String PROPERTY_ID = "id";
public static final String PROPERTY_NAME = "name";
public static final String PROPERTY_DESCRIPTION = "description";
public static final String PROPERTY_VALUE_CLASS = "valueClass";
public static final String PROPERTY_DESCRIPTION_URL = "descriptionUrl";
public static final String PROPERTY_VALUE_URL = "valueUrl";
private String id;
private String name;
private String description;
@XmlElement(name = "description-link")
private String descriptionUrl;
@XmlElement(name = "value-link")
private String valueUrl;
@XmlElement(name = "value-type")
@XmlJavaTypeAdapter(ClassXmlAdapter.class)
private Class<T> valueClass;
//TODO
@XmlTransient
protected IAggregator aggregator;
@XmlElementWrapper(name = "data-groups")
@XmlElement(name = "group")
private Set<String> groups;
private SortDirection sortDirection;
public SortDirection getSortDirection() {
if (sortDirection == null) {
return SortDirection.ASCENDING;
}
return sortDirection;
}
public void setSortDirection(SortDirection sortDirection) {
this.sortDirection = sortDirection;
}
public IAggregator getAggregator() {
if (aggregator == null) {
return SumAggregator.INSTANCE;
}
return aggregator;
}
public void setAggregator(IAggregator aggregator) {
this.aggregator = aggregator;
}
@Override
public Set<String> getGroups() {
if (groups == null || groups.size() == 0) {
HashSet nullSet = new HashSet();
nullSet.add(LayerDef.ALL_DATA_GROUP);
return nullSet;
} else {
return groups;
}
}
public MatrixLayer() {
// JAXB requirement
}
public MatrixLayer(String id, Class<T> valueClass) {
this(id, valueClass, null, null, new HashSet<String>());
}
public MatrixLayer(String id, Class<T> valueClass, String name, String description, Set<String> groups) {
this.id = id;
this.valueClass = valueClass;
this.name = name;
this.description = description;
this.groups = groups;
}
public MatrixLayer(String id, Class<T> valueClass, String name, String description) {
this(id, valueClass, name, description, new HashSet<String>());
}
@Override
public String getId() {
return id;
}
@Override
public String getName() {
if (name == null) {
return id;
}
return name;
}
@Override
public String getDescription() {
if (description == null) {
return "";
}
return description;
}
@Override
public Class<T> getValueClass() {
return valueClass;
}
@Override
public ValueTranslator<T> getTranslator() {
return ValueTranslatorFactory.createValueTranslator(getValueClass());
}
public void setDescription(String description) {
String oldValue = this.description;
this.description = description;
firePropertyChange(PROPERTY_DESCRIPTION, oldValue, description);
}
public void setId(String id) {
String old = this.id;
this.id = id;
firePropertyChange(PROPERTY_ID, old, id);
}
public void setName(String name) {
String old = this.name;
this.name = name;
firePropertyChange(PROPERTY_NAME, old, name);
}
public void setValueClass(Class<T> valueClass) {
Class old = this.valueClass;
this.valueClass = valueClass;
firePropertyChange(PROPERTY_VALUE_CLASS, old, valueClass);
}
public String getDescriptionUrl() {
return descriptionUrl;
}
public void setDescriptionUrl(String descriptionUrl) {
String old = this.descriptionUrl;
this.descriptionUrl = descriptionUrl;
firePropertyChange(PROPERTY_DESCRIPTION_URL, old, descriptionUrl);
}
public String getValueUrl() {
return valueUrl;
}
public void setValueUrl(String valueUrl) {
String old = this.valueUrl;
this.valueUrl = valueUrl;
firePropertyChange(PROPERTY_VALUE_URL, old, valueUrl);
}
@Override
public boolean equals(Object o) {
if (this == o) return true;
if (o == null || getClass() != o.getClass()) return false;
MatrixLayer that = (MatrixLayer) o;
return !(id != null ? !id.equals(that.id) : that.id != null);
}
@Override
public int hashCode() {
return id != null ? id.hashCode() : 0;
}
public String toString() {
return (name != null ? name : id);
}
@Override
public void detach() {
this.cache = null;
}
transient Map<IKey, Object> cache;
public <T> void setCache(IKey<T> key, T value) {
this.getCacheMap().put(key, value);
}
public <T> T getCache(IKey<T> key) {
return (T) this.getCacheMap().get(key);
}
private Map<IKey, Object> getCacheMap() {
if (cache == null) {
cache = new HashMap<>();
}
return cache;
}
}